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Iker Martín Álvarez
Proteo
Commits
7cbd92e2
Commit
7cbd92e2
authored
Oct 17, 2022
by
iker_martin
Browse files
Refactor de metodos spawn casi completado. Falta realizar pruebas con Merge shrink asincrono.
parent
67e9186e
Changes
11
Show whitespace changes
Inline
Side-by-side
Codes/IOcodes/read_ini.c
View file @
7cbd92e2
...
...
@@ -265,7 +265,6 @@ void print_config_group(configuration *user_config, int grp) {
* configuracion al otro grupo.
*/
void
send_config_file
(
configuration
*
config_file
,
int
root
,
MPI_Comm
intercomm
)
{
MPI_Datatype
config_type
,
config_type_array
,
iter_stage_type
;
// Obtener un tipo derivado para enviar todos los
...
...
@@ -304,10 +303,7 @@ void send_config_file(configuration *config_file, int root, MPI_Comm intercomm)
* la funcion "free_config".
*/
void
recv_config_file
(
int
root
,
MPI_Comm
intercomm
,
configuration
**
config_file_out
)
{
MPI_Datatype
config_type
,
config_type_array
,
iter_stage_type
;
configuration
*
config_file
=
malloc
(
sizeof
(
configuration
)
*
1
);
// Obtener un tipo derivado para recibir todos los
...
...
Codes/Main/Main.c
View file @
7cbd92e2
...
...
@@ -112,13 +112,14 @@ int main(int argc, char *argv[]) {
do
{
group
->
grp
=
group
->
grp
+
1
;
if
(
group
->
grp
!=
0
)
obtain_op_times
(
0
);
//Obtener los nuevos valores de tiempo para el computo
set_benchmark_grp
(
group
->
grp
);
get_malleability_user_comm
(
&
comm
);
MPI_Comm_size
(
comm
,
&
(
group
->
numP
));
MPI_Comm_rank
(
comm
,
&
(
group
->
myId
));
if
(
group
->
grp
!=
0
)
obtain_op_times
(
0
);
//Obtener los nuevos valores de tiempo para el computo
if
(
config_file
->
n_resizes
!=
group
->
grp
+
1
)
{
if
(
config_file
->
n_resizes
!=
group
->
grp
+
1
)
{
//TODO Llevar a otra funcion
set_malleability_configuration
(
config_file
->
sm
,
config_file
->
ss
,
config_file
->
phy_dist
[
group
->
grp
+
1
],
config_file
->
at
,
-
1
);
set_children_number
(
config_file
->
procs
[
group
->
grp
+
1
]);
// TODO TO BE DEPRECATED
...
...
@@ -196,7 +197,7 @@ int work() {
state
=
malleability_checkpoint
();
iter
=
0
;
while
(
state
==
MALL_DIST_PENDING
||
state
==
MALL_SPAWN_PENDING
||
state
==
MALL_SPAWN_SINGLE_PENDING
)
{
while
(
state
==
MALL_DIST_PENDING
||
state
==
MALL_SPAWN_PENDING
||
state
==
MALL_SPAWN_SINGLE_PENDING
||
state
==
MALL_SPAWN_ADAPT_POSTPONE
)
{
if
(
iter
<
config_file
->
iters
[
group
->
grp
+
1
])
{
iterate
(
matrix
,
config_file
->
granularity
,
state
,
iter
);
iter
++
;
...
...
@@ -409,7 +410,7 @@ void obtain_op_times(int compute) {
for
(
i
=
0
;
i
<
config_file
->
n_stages
;
i
++
)
{
time
+=
init_stage
(
config_file
,
i
,
*
group
,
comm
,
compute
);
}
if
(
!
compute
)
results
->
wasted_time
+=
time
;
if
(
!
compute
)
{
results
->
wasted_time
+=
time
;
}
}
/*
...
...
Codes/Main/process_stage.c
View file @
7cbd92e2
...
...
@@ -267,19 +267,18 @@ void linear_regression_stage(iter_stage_t *stage, group_data group, MPI_Comm com
*/
double
init_matrix_pt
(
group_data
group
,
configuration
*
config_file
,
iter_stage_t
*
stage
,
MPI_Comm
comm
,
int
compute
)
{
double
result
,
t_stage
;
double
result
,
t_stage
,
start_time
;
result
=
0
;
t_stage
=
stage
->
t_stage
*
config_file
->
factors
[
group
.
grp
];
initMatrix
(
&
(
stage
->
double_array
),
config_file
->
granularity
);
double
start_time
=
MPI_Wtime
();
if
(
group
.
myId
==
ROOT
&&
compute
)
{
result
+=
process_stage
(
*
config_file
,
*
stage
,
group
,
comm
);
}
if
(
compute
)
{
start_time
=
MPI_Wtime
();
if
(
group
.
myId
==
ROOT
)
{
result
+=
process_stage
(
*
config_file
,
*
stage
,
group
,
comm
);
stage
->
t_op
=
(
MPI_Wtime
()
-
start_time
)
/
stage
->
operations
;
//Tiempo de una operacion
}
MPI_Bcast
(
&
(
stage
->
t_op
),
1
,
MPI_DOUBLE
,
ROOT
,
comm
);
}
stage
->
operations
=
t_stage
/
stage
->
t_op
;
...
...
@@ -292,13 +291,12 @@ double init_pi_pt(group_data group, configuration *config_file, iter_stage_t *st
result
=
0
;
t_stage
=
stage
->
t_stage
*
config_file
->
factors
[
group
.
grp
];
if
(
compute
)
{
start_time
=
MPI_Wtime
();
if
(
group
.
myId
==
ROOT
&&
compute
)
{
if
(
group
.
myId
==
ROOT
)
{
result
+=
process_stage
(
*
config_file
,
*
stage
,
group
,
comm
);
}
if
(
compute
)
{
stage
->
t_op
=
(
MPI_Wtime
()
-
start_time
)
/
stage
->
operations
;
//Tiempo de una operacion
}
MPI_Bcast
(
&
(
stage
->
t_op
),
1
,
MPI_DOUBLE
,
ROOT
,
comm
);
}
stage
->
operations
=
t_stage
/
stage
->
t_op
;
...
...
@@ -360,13 +358,13 @@ double init_comm_allgatherv_pt(group_data group, configuration *config_file, ite
MPI_Reduce
(
&
time
,
NULL
,
1
,
MPI_DOUBLE
,
MPI_MAX
,
ROOT
,
comm
);
}
}
if
(
stage
->
counts
.
counts
!=
NULL
)
freeCounts
(
&
(
stage
->
counts
));
prepare_comm_allgatherv
(
group
.
numP
,
stage
->
real_bytes
,
&
(
stage
->
counts
));
get_block_dist
(
stage
->
real_bytes
,
group
.
myId
,
group
.
numP
,
&
dist_data
);
stage
->
my_bytes
=
dist_data
.
tamBl
;
if
(
stage
->
array
!=
NULL
)
free
(
stage
->
array
);
stage
->
array
=
malloc
(
sizeof
(
char
)
*
stage
->
my_bytes
);
...
...
Codes/Main/process_stage.h
View file @
7cbd92e2
...
...
@@ -8,11 +8,12 @@
enum
compute_methods
{
COMP_PI
,
COMP_MATRIX
,
COMP_POINT
,
COMP_BCAST
,
COMP_ALLGATHER
,
COMP_REDUCE
,
COMP_ALLREDUCE
};
//FIXME Refactor el void
double
init_stage
(
configuration
*
config_file
,
int
stage_i
,
group_data
group
,
MPI_Comm
comm
,
int
compute
);
//double stage_init_all();
double
process_stage
(
configuration
config_file
,
iter_stage_t
stage
,
group_data
group
,
MPI_Comm
comm
);
double
latency
(
int
myId
,
int
numP
,
MPI_Comm
comm
);
double
bandwidth
(
int
myId
,
int
numP
,
MPI_Comm
comm
,
double
latency
,
int
n
);
//FIXME Refactor el void??
void
linear_regression_stage
(
iter_stage_t
*
stage
,
group_data
group
,
MPI_Comm
comm
);
#endif
Codes/compila.sh
deleted
100755 → 0
View file @
67e9186e
mpicc
-Wall
Main/Main.c Main/computing_func.c Main/comunication_func.c Main/linear_reg.c Main/process_stage.c IOcodes/results.c IOcodes/read_ini.c IOcodes/ini.c malleability/malleabilityManager.c malleability/malleabilityTypes.c malleability/malleabilityZombies.c malleability/ProcessDist.c malleability/CommDist.c malleability/distribution_methods/block_distribution.c
-pthread
-lslurm
-lm
if
[
$#
-gt
0
]
then
if
[
$1
=
"-e"
]
then
echo
"Creado ejecutable para ejecuciones"
cp
a.out bench.out
fi
fi
Codes/malleability/malleabilityManager.c
View file @
7cbd92e2
...
...
@@ -141,6 +141,7 @@ void free_malleability() {
}
/*
* TODO Reescribir
* Se realiza el redimensionado de procesos por parte de los padres.
*
* Se crean los nuevos procesos con la distribucion fisica elegida y
...
...
@@ -156,48 +157,68 @@ void free_malleability() {
* y finalmente se desconectan los dos grupos de procesos.
*/
int
malleability_checkpoint
()
{
double
end_real_time
;
if
(
state
==
MALL_UNRESERVED
)
return
MALL_UNRESERVED
;
if
(
state
==
MALL_NOT_STARTED
)
{
//printf("P%d -- Estado %d\n", mall->myId, state);
switch
(
state
)
{
case
MALL_UNRESERVED
:
break
;
case
MALL_NOT_STARTED
:
// Comprobar si se tiene que realizar un redimensionado
//if(CHECK_RMS()) {return MALL_DENIED;}
state
=
spawn_step
();
if
(
state
==
MALL_SPAWN_COMPLETED
){
state
=
start_redistribution
();
if
(
state
==
MALL_SPAWN_COMPLETED
||
state
==
MALL_SPAWN_ADAPT_POSTPONE
){
malleability_checkpoint
();
}
break
;
}
else
if
(
state
==
MALL_SPAWN_PENDING
||
state
==
MALL_SPAWN_SINGLE_PENDING
)
{
// Comprueba si el spawn ha terminado y comienza la redistribucion
double
end_real_time
;
/*if(mall_conf->spawn_type == MALL_SPAWN_MERGE && mall_conf->spawn_type == MALL_SPAWN_PTHREAD && mall->numP > mall->numC) {
state = shrink_redistribution(); //TODO REFACTOR
} else {
*/
//state = check_slurm_comm(mall->myId, mall->root, mall->numP, &(mall->intercomm), mall->comm, mall->thread_comm, &end_real_time); //FIXMENOW
state
=
check_spawn_state
(
&
(
mall
->
intercomm
),
mall
->
comm
,
MALL_DIST_PENDING
,
&
end_real_time
);
//FIXME 3 argumento depende de la distribucion
if
(
state
==
MALL_SPAWN_COMPLETED
||
state
==
MALL_DIST_ADAPTED
)
{
//FIXME MALL_DIST_ADAPTED tiene que recoger los tiempos
case
MALL_SPAWN_PENDING
:
// Comprueba si el spawn ha terminado y comienza la redistribucion
case
MALL_SPAWN_SINGLE_PENDING
:
state
=
check_spawn_state
(
&
(
mall
->
intercomm
),
mall
->
comm
,
&
end_real_time
);
if
(
state
==
MALL_SPAWN_COMPLETED
||
state
==
MALL_SPAWN_ADAPTED
)
{
mall_conf
->
results
->
spawn_time
[
mall_conf
->
grp
]
=
MPI_Wtime
()
-
mall_conf
->
results
->
spawn_start
;
if
(
malleability_spawn_contains_strat
(
mall_conf
->
spawn_strategies
,
MALL_SPAWN_PTHREAD
,
NULL
))
{
mall_conf
->
results
->
spawn_real_time
[
mall_conf
->
grp
]
=
end_real_time
-
mall_conf
->
results
->
spawn_start
;
malleability_checkpoint
();
}
//TODO Si es MERGE, metodo diferente de redistribucion de datos
break
;
case
MALL_SPAWN_ADAPT_POSTPONE
:
case
MALL_SPAWN_COMPLETED
:
state
=
start_redistribution
();
}
//}
malleability_checkpoint
();
break
;
}
else
if
(
state
==
MALL_DIST_PENDING
)
{
case
MALL_DIST_PENDING
:
if
(
mall_conf
->
comm_type
==
MAL_USE_THREAD
)
{
state
=
thread_check
();
}
else
{
state
=
check_redistribution
();
}
if
(
state
!=
MALL_DIST_PENDING
)
{
malleability_checkpoint
();
}
break
;
case
MALL_SPAWN_ADAPT_PENDING
:
mall_conf
->
results
->
spawn_start
=
MPI_Wtime
();
unset_spawn_postpone_flag
(
state
);
state
=
check_spawn_state
(
&
(
mall
->
intercomm
),
mall
->
comm
,
&
end_real_time
);
printf
(
"TEST END state=%d
\n
"
,
state
);
if
(
!
malleability_spawn_contains_strat
(
mall_conf
->
spawn_strategies
,
MALL_SPAWN_PTHREAD
,
NULL
))
{
mall_conf
->
results
->
spawn_time
[
mall_conf
->
grp
]
=
MPI_Wtime
()
-
mall_conf
->
results
->
spawn_start
;
}
break
;
case
MALL_SPAWN_ADAPTED
:
shrink_redistribution
();
break
;
case
MALL_DIST_COMPLETED
:
//TODO No es esto muy feo?
state
=
MALL_COMPLETED
;
break
;
}
return
state
;
}
...
...
@@ -410,19 +431,10 @@ void recv_data(int numP_parents, malleability_data_t *data_struct, int is_asynch
void
Children_init
()
{
int
numP_parents
,
root_parents
,
i
;
int
is_intercomm
;
//MPI_Comm aux;
malleability_connect_children
(
mall
->
myId
,
mall
->
numP
,
mall
->
root
,
mall
->
comm
,
&
numP_parents
,
&
root_parents
,
&
(
mall
->
intercomm
));
/*MPI_Bcast(&spawn_is_single, 1, MPI_INT, MALLEABILITY_ROOT, mall->intercomm);
if(spawn_is_single) {
malleability_establish_connection(mall->myId, MALLEABILITY_ROOT, &(mall->intercomm)); //FIXMENOW
}
MPI_Bcast(&(mall_conf->spawn_type), 1, MPI_INT, MALLEABILITY_ROOT, mall->intercomm);
MPI_Bcast(&root_parents, 1, MPI_INT, MALLEABILITY_ROOT, mall->intercomm);
MPI_Bcast(&numP_parents, 1, MPI_INT, root_parents, mall->intercomm);
*/
// TODO A partir de este punto tener en cuenta si es BASELINE o MERGE
MPI_Comm_test_inter
(
mall
->
intercomm
,
&
is_intercomm
);
// TODO A partir de este punto tener en cuenta si es BASELINE o MERGE
recv_config_file
(
mall
->
root
,
mall
->
intercomm
,
&
(
mall_conf
->
config_file
));
...
...
@@ -460,21 +472,18 @@ void Children_init() {
}
}
/*
if(mall_conf->spawn_type == MALL_SPAWN_MERGE || mall_conf->spawn_type == MALL_SPAWN_MERGE_PTHREAD) {
proc_adapt_expand(&(mall->numP), mall->numP+numP_parents, mall->intercomm, &(mall->comm), MALLEABILITY_CHILDREN); //FIXMENOW
// Guardar los resultados de esta transmision
recv_results
(
mall_conf
->
results
,
mall
->
root
,
mall_conf
->
config_file
->
n_resizes
,
mall
->
intercomm
);
if
(
!
is_intercomm
)
{
if
(
mall
->
thread_comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
thread_comm
));
if
(
mall
->
comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
comm
));
if
(
mall
->
user_comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
user_comm
));
//TODO No es peligroso?
MPI_Comm_dup(mall->comm, &aux);
mall->thread_comm = aux;
MPI_Comm_dup(mall->comm, &aux);
mall->user_comm = aux;
}
*/
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
thread_comm
));
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
comm
));
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
user_comm
));
// Guardar los resultados de esta transmision
recv_results
(
mall_conf
->
results
,
mall
->
root
,
mall_conf
->
config_file
->
n_resizes
,
mall
->
intercomm
);
}
MPI_Comm_disconnect
(
&
(
mall
->
intercomm
));
}
...
...
@@ -491,21 +500,10 @@ void Children_init() {
int
spawn_step
(){
mall_conf
->
results
->
spawn_start
=
MPI_Wtime
();
/* FIXME Mantener funcion de shrink_redistribuition
if((mall_conf->spawn_type == MALL_SPAWN_MERGE) && mall->numP > mall->numC) {
state = shrink_redistribution();
return state;
}
*/
//state = init_slurm_comm(mall->name_exec, mall->num_cpus, mall->num_nodes, mall->nodelist, mall->myId, mall->numP, mall->numC, mall->root, mall_conf->spawn_dist, mall_conf->spawn_type, mall_conf->spawn_is_single, mall->thread_comm, &(mall->intercomm)); //FIXMENOW
state
=
init_spawn
(
mall
->
name_exec
,
mall
->
num_cpus
,
mall
->
num_nodes
,
mall
->
nodelist
,
mall
->
myId
,
mall
->
numP
,
mall
->
numC
,
mall
->
root
,
mall_conf
->
spawn_dist
,
mall_conf
->
spawn_method
,
mall_conf
->
spawn_strategies
,
mall
->
thread_comm
,
&
(
mall
->
intercomm
));
if
(
!
malleability_spawn_contains_strat
(
mall_conf
->
spawn_strategies
,
MALL_SPAWN_PTHREAD
,
NULL
))
{
mall_conf
->
results
->
spawn_time
[
mall_conf
->
grp
]
=
MPI_Wtime
()
-
mall_conf
->
results
->
spawn_start
;
}
else
{
//mall_conf->results->spawn_thread_time[mall_conf->grp] = MPI_Wtime() - mall_conf->results->spawn_start;
//mall_conf->results->spawn_start = MPI_Wtime();
}
return
state
;
}
...
...
@@ -526,18 +524,27 @@ int spawn_step(){
* grupos de procesos.
*/
int
start_redistribution
()
{
int
rootBcast
=
MPI_PROC_NULL
;
if
(
mall
->
myId
==
mall
->
root
)
rootBcast
=
MPI_ROOT
;
int
rootBcast
,
is_intercomm
;
/*
MPI_Bcast(&(mall_conf->spawn_type), 1, MPI_INT, rootBcast, mall->intercomm);
MPI_Bcast(&(mall->root), 1, MPI_INT, rootBcast, mall->intercomm);
MPI_Bcast(&(mall->numP), 1, MPI_INT, rootBcast, mall->intercomm);
*/
is_intercomm
=
0
;
if
(
mall
->
intercomm
!=
MPI_COMM_NULL
)
{
MPI_Comm_test_inter
(
mall
->
intercomm
,
&
is_intercomm
);
}
else
{
// Si no tiene comunicador creado, se debe a que se ha pospuesto el Spawn
// y se trata del spawn Merge Shrink
mall
->
intercomm
=
mall
->
comm
;
if
(
mall
->
comm
==
MPI_COMM_NULL
)
{
printf
(
"COMM nulo?
\n
"
);}
}
if
(
is_intercomm
)
{
rootBcast
=
mall
->
myId
==
mall
->
root
?
MPI_ROOT
:
MPI_PROC_NULL
;
}
else
{
rootBcast
=
mall
->
root
;
}
send_config_file
(
mall_conf
->
config_file
,
rootBcast
,
mall
->
intercomm
);
if
(
dist_a_data
->
entries
||
rep_a_data
->
entries
)
{
//
Recibi
r datos asincronos
if
(
dist_a_data
->
entries
||
rep_a_data
->
entries
)
{
//
Envia
r datos asincronos
mall_conf
->
results
->
async_start
=
MPI_Wtime
();
comm_data_info
(
rep_a_data
,
dist_a_data
,
MALLEABILITY_NOT_CHILDREN
,
mall
->
myId
,
mall
->
root
,
mall
->
intercomm
);
if
(
mall_conf
->
comm_type
==
MAL_USE_THREAD
)
{
...
...
@@ -609,9 +616,22 @@ int check_redistribution() {
* Finalmente termina enviando los datos temporales a los hijos.
*/
int
end_redistribution
()
{
int
result
,
i
,
rootBcast
=
MPI_PROC_NULL
;
//MPI_Comm aux;
if
(
mall
->
myId
==
mall
->
root
)
rootBcast
=
MPI_ROOT
;
int
i
,
is_intercomm
,
rootBcast
,
local_state
;
is_intercomm
=
0
;
if
(
mall
->
intercomm
!=
MPI_COMM_NULL
)
{
MPI_Comm_test_inter
(
mall
->
intercomm
,
&
is_intercomm
);
}
else
{
// Si no tiene comunicador creado, se debe a que se ha pospuesto el Spawn
// y se trata del spawn Merge Shrink
mall
->
intercomm
=
mall
->
comm
;
}
if
(
is_intercomm
)
{
rootBcast
=
mall
->
myId
==
mall
->
root
?
MPI_ROOT
:
MPI_PROC_NULL
;
}
else
{
rootBcast
=
mall
->
root
;
}
if
(
dist_s_data
->
entries
||
rep_s_data
->
entries
)
{
// Enviar datos sincronos
comm_data_info
(
rep_s_data
,
dist_s_data
,
MALLEABILITY_NOT_CHILDREN
,
mall
->
myId
,
mall
->
root
,
mall
->
intercomm
);
...
...
@@ -630,116 +650,64 @@ int end_redistribution() {
}
}
/*
if(mall_conf->spawn_type == MALL_SPAWN_MERGE) {
double time_adapt = MPI_Wtime();
send_results
(
mall_conf
->
results
,
rootBcast
,
mall_conf
->
config_file
->
n_resizes
,
mall
->
intercomm
);
proc_adapt_expand(&(mall->numP), mall->numC, mall->intercomm, &(mall->comm), MALLEABILITY_NOT_CHILDREN); //FIXMENOW
local_state
=
MALL_DIST_COMPLETED
;
if
(
!
is_intercomm
)
{
// Merge Spawn
if
(
mall
->
numP
<
mall
->
numC
)
{
// Expand
if
(
mall
->
thread_comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
thread_comm
));
MPI_Comm_dup(mall->comm, &aux);
mall->thread_comm = aux;
MPI_Comm_dup(mall->comm, &aux);
mall->user_comm = aux;
mall_conf->results->spawn_time[mall_conf->grp] += MPI_Wtime() - time_adapt;
// result = MAL_DIST_ADAPTED;
if
(
mall
->
comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
comm
));
if
(
mall
->
user_comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
user_comm
));
//TODO No es peligroso?
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
thread_comm
));
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
comm
));
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
user_comm
));
}
else
{
// Shrink || Merge Shrink requiere de mas tareas
local_state
=
MALL_SPAWN_ADAPT_PENDING
;
}
}
printf
(
"TEST 1 P%d Comm=%d intercomm=%d
\n
"
,
mall
->
myId
,
mall
->
comm
,
mall
->
intercomm
);
MPI_Barrier
(
mall
->
comm
);
//FIXMENOW Por alguna razon da error en Comm
if
(
mall
->
intercomm
!=
MPI_COMM_NULL
)
{
if
(
mall
->
intercomm
==
MPI_COMM_WORLD
)
{
printf
(
"TEST 2 P%d Comm=%d intercomm=%d ES WORLD
\n
"
,
mall
->
myId
,
mall
->
comm
,
mall
->
intercomm
);
}
//FIXMENOW Intercomm se borra, pero no es COMM WORLD ni COMM NULL
MPI_Comm_disconnect
(
&
(
mall
->
intercomm
));
printf
(
"TEST 3 P%d Borra intercomm = %d
\n
"
,
mall
->
myId
,
mall
->
intercomm
);
}
*/
send_results
(
mall_conf
->
results
,
rootBcast
,
mall_conf
->
config_file
->
n_resizes
,
mall
->
intercomm
);
result
=
MALL_DIST_COMPLETED
;
printf
(
"TEST 4 P%d Comm=%d intercomm=%d
\n
"
,
mall
->
myId
,
mall
->
comm
,
mall
->
intercomm
);
MPI_Barrier
(
mall
->
comm
);
//FIXMENOW Por alguna razon da error en Comm
MPI_Comm_disconnect
(
&
(
mall
->
intercomm
));
state
=
MALL_NOT_STARTED
;
return
result
;
return
local_state
;
}
///=============================================
///=============================================
///=============================================
double
time_adapt
,
time_adapt_end
;
/*
int state_shrink=0; //TODO Refactor
pthread_t thread_shrink;
MPI_Comm comm_shrink;
int thread_shrink_creation();
void *thread_shrink_work();
int thread_shrink_creation() {
if(pthread_create(&thread_shrink, NULL, thread_shrink_work, NULL)) {
printf("Error al crear el hilo\n");
MPI_Abort(MPI_COMM_WORLD, -1);
return -1;
}
return MAL_SPAWN_PENDING;
}
void* thread_shrink_work() {
proc_adapt_shrink(mall->numC, &comm_shrink, mall->myId); //FIXMENOW
time_adapt_end = MPI_Wtime();
state_shrink=2;
pthread_exit(NULL);
}
*/
///=============================================
///=============================================
///=============================================
int
shrink_redistribution
()
{
//int global_state;
double
time_aux
;
MPI_Comm
aux_comm
;
/*
if(mall_conf->spawn_type == MALL_SPAWN_MERGE && mall_conf->spawn_type == MALL_SPAWN_PTHREAD) {
if(state_shrink == 0) {
time_adapt = MPI_Wtime();
state_shrink = 1;
MPI_Comm_dup(mall->comm, &comm_shrink);
thread_shrink_creation();
return MAL_SPAWN_PENDING;
} else if(state_shrink>0) {
MPI_Allreduce(&state_shrink, &global_state, 1, MPI_INT, MPI_MIN, mall->comm);
if(global_state < 2) return MAL_SPAWN_PENDING;
time_aux = MPI_Wtime();
if(pthread_join(thread_shrink, NULL)) {
printf("Error al esperar al hilo\n");
MPI_Abort(MPI_COMM_WORLD, -1);
return -10;
}
MPI_Comm_dup(mall->comm, &aux_comm);
mall->comm = comm_shrink;
}
} else {
time_adapt = MPI_Wtime();
MPI_Comm_dup(mall->comm, &aux_comm);
proc_adapt_shrink( mall->numC, &(mall->comm), mall->myId); //FIXMENOW
}
*/
MPI_Comm_dup
(
mall
->
comm
,
&
aux_comm
);
double
time_extra
=
MPI_Wtime
();
//TODO REFACTOR -- Que solo la llamada de collect iters este fuera de los hilos
zombies_collect_suspended
(
aux_
comm
,
mall
->
myId
,
mall
->
numP
,
mall
->
numC
,
mall
->
root
,
(
void
*
)
mall_conf
->
results
,
mall
->
us
er
_
comm
);
zombies_collect_suspended
(
mall
->
comm
,
mall
->
myId
,
mall
->
numP
,
mall
->
numC
,
mall
->
root
,
(
void
*
)
mall_conf
->
results
,
mall
->
int
ercomm
);
if
(
mall
->
myId
<
mall
->
numC
)
{
MPI_Comm_free
(
&
aux_comm
);
MPI_Comm_dup
(
mall
->
comm
,
&
aux_comm
);
// FIXME Que pasa con los comunicadores Thread_comm y User_comm
mall
->
thread_comm
=
aux_comm
;
MPI_Comm_dup
(
mall
->
comm
,
&
aux_comm
);
mall
->
user_comm
=
aux_comm
;
if
(
mall
->
thread_comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
thread_comm
));
if
(
mall
->
comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
comm
));
if
(
mall
->
user_comm
!=
MPI_COMM_WORLD
)
MPI_Comm_free
(
&
(
mall
->
user_comm
));
//TODO No es peligroso?
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
thread_comm
));
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
comm
));
MPI_Comm_dup
(
mall
->
intercomm
,
&
(
mall
->
user_comm
));
mall_conf
->
results
->
spawn_time
[
mall_conf
->
grp
]
=
MPI_Wtime
()
-
time_
adapt
;
//FIXME Error
if
(
mall_conf
->
spawn_method
==
MALL_SPAWN_MERGE
&&
malleability_spawn_contains_strat
(
mall_conf
->
spawn_strategies
,
MALL_SPAWN_PTHREAD
,
NULL
))
{
mall_conf
->
results
->
spawn_real_time
[
mall_conf
->
grp
]
=
time_adapt_end
-
time_adapt
+
MPI_Wtime
()
-
time_
aux
;
//FIXME Error
mall_conf
->
results
->
spawn_time
[
mall_conf
->
grp
]
+
=
MPI_Wtime
()
-
time_
extra
;
if
(
malleability_spawn_contains_strat
(
mall_conf
->
spawn_strategies
,
MALL_SPAWN_PTHREAD
,
NULL
))
{
mall_conf
->
results
->
spawn_real_time
[
mall_conf
->
grp
]
+
=
MPI_Wtime
()
-
time_
extra
;
}
return
MALL_DIST_COMPLETED
;
//FIXME Refactor Poner a SPAWN_COMPLETED
return
MALL_DIST_COMPLETED
;
}
else
{
return
MALL_ZOMBIE
;
}
...
...
Codes/malleability/malleabilityStates.h
View file @
7cbd92e2
...
...
@@ -20,13 +20,11 @@
#define MAL_DIST_ADAPTED 8
*/
enum
mall_states
{
MALL_UNRESERVED
,
MALL_NOT_STARTED
,
MALL_ZOMBIE
,
MALL_SPAWN_PENDING
,
MALL_SPAWN_SINGLE_
PENDING
,
MALL_SPAWN_
SINGLE_COMPLETED
,
MALL_SPAWN_ADAPT_POSTPONE
,
MALL_SPAWN_
COMPLETED
,
MALL_DIS
T_PENDING
,
MALL_
DIST_COMPLE
TED
,
MALL_
DIST_ADAP
TED
};
enum
mall_states
{
MALL_UNRESERVED
,
MALL_NOT_STARTED
,
MALL_ZOMBIE
,
MALL_SPAWN_PENDING
,
MALL_SPAWN_SINGLE_PENDING
,
MALL_SPAWN_SINGLE_
COMPLETED
,
MALL_SPAWN_
ADAPT_POSTPONE
,
MALL_SPAWN_COMPLETED
,
MALL_DIST_PENDING
,
MALL_DIST_COMPLETED
,
MALL_SPAWN_
ADAP
T_PENDING
,
MALL_
SPAWN_ADAP
TED
,
MALL_
COMPLE
TED
};
enum
mall_spawn_methods
{
MALL_SPAWN_BASELINE
,
MALL_SPAWN_MERGE
};
//#define MALL_SPAWN_SERIAL 2
#define MALL_SPAWN_PTHREAD 2
//#define MALL_SPAWN_MULTIPLE 5
#define MALL_SPAWN_SINGLE 3
#define MALLEABILITY_ROOT 0
...
...
Codes/malleability/malleabilityTypes.c
View file @
7cbd92e2
...
...
@@ -49,13 +49,15 @@ void add_data(void *data, int total_qty, int type, int request_qty, malleability
* unicamente.
*/
void
comm_data_info
(
malleability_data_t
*
data_struct_rep
,
malleability_data_t
*
data_struct_dist
,
int
is_children_group
,
int
myId
,
int
root
,
MPI_Comm
intercomm
)
{
int
i
,
rootBcast
=
MPI_PROC_NULL
;
int
i
,
is_intercomm
,
rootBcast
=
MPI_PROC_NULL
;
MPI_Datatype
entries_type
,
struct_type
;
if
(
is_children_group
)
{
rootBcast
=
root
;
MPI_Comm_test_inter
(
intercomm
,
&
is_intercomm
);
if
(
is_intercomm
&&
!
is_children_group
)
{
rootBcast
=
myId
==
root
?
MPI_ROOT
:
MPI_PROC_NULL
;
}
else
{
if
(
myId
==
root
)
rootBcast
=
MPI_ROOT
;
rootBcast
=
root
;
}
// Mandar primero numero de entradas
...
...
Codes/malleability/spawn_methods/GenericSpawn.c
View file @
7cbd92e2
...
...
@@ -31,7 +31,6 @@ void generic_spawn(MPI_Comm *child, int data_stage);
int
check_single_state
(
MPI_Comm
comm
,
int
global_state
);
int
check_generic_state
(
MPI_Comm
comm
,
MPI_Comm
*
child
,
int
local_state
,
double
*
real_time
);
int
check_merge_shrink_state
();
//--------------PRIVATE THREADS DECLARATIONS---------------//
int
allocate_thread_spawn
();
...
...
@@ -68,7 +67,10 @@ int init_spawn(char *argv, int num_cpus, int num_nodes, char *nodelist, int myId
}
else
{
local_state
=
spawn_data
->
spawn_is_single
?
MALL_SPAWN_SINGLE_PENDING
:
MALL_SPAWN_PENDING
;
local_state
=
spawn_data
->
spawn_is_single
?
MALL_SPAWN_SINGLE_PENDING
:
MALL_SPAWN_PENDING
;
local_state
=
spawn_data
->
spawn_method
==
MALL_SPAWN_MERGE
&&
spawn_data
->
initial_qty
>
spawn_data
->
target_qty
?
MALL_SPAWN_ADAPT_POSTPONE
:
local_state
;
set_spawn_state
(
local_state
,
0
);
if
((
spawn_data
->
spawn_is_single
&&
myId
==
root
)
||
!
spawn_data
->
spawn_is_single
)
{
allocate_thread_spawn
();
...
...
@@ -82,24 +84,25 @@ int init_spawn(char *argv, int num_cpus, int num_nodes, char *nodelist, int myId
* Comprueba si una configuracion para crear un nuevo grupo de procesos esta lista,
* y en caso de que lo este, se devuelve el communicador a estos nuevos procesos.
*/
int
check_spawn_state
(
MPI_Comm
*
child
,
MPI_Comm
comm
,
int
data_dist_completed
,
double
*
real_time
)
{
int
check_spawn_state
(
MPI_Comm
*
child
,
MPI_Comm
comm
,
double
*
real_time
)
{
int
local_state
;
int
global_state
=
MALL_NOT_STARTED
;
if
(
spawn_data
->
spawn_is_async
)
{
// Async
local_state
=
get_spawn_state
(
spawn_data
->
spawn_is_async
);
printf
(
"Test 3.5 local=%d
\n
"
,
local_state
);
if
(
local_state
==
MALL_SPAWN_SINGLE_PENDING
||
local_state
==
MALL_SPAWN_SINGLE_COMPLETED
)
{
// Single
global_state
=
check_single_state
(
comm
,
local_state
);
}
else
if
(
local_state
==
MALL_SPAWN_ADAPT_POSTPONE
&&
data_dist_completed
)
{
// Start Merge Shrink Async
global_state
=
check_merge_shrink_state
();
}
else
if
(
local_state
==
MALL_SPAWN_PENDING
||
local_state
==
MALL_SPAWN_COMPLETED
||
local_state
==
MALL_DIST_ADAPTED
)
{
// Baseline
}
else
if
(
local_state
==
MALL_SPAWN_PENDING
||
local_state
==
MALL_SPAWN_COMPLETED
)
{
// Baseline
global_state
=
check_generic_state
(
comm
,
child
,
local_state
,
real_time
);
}
else
{
printf
(
"Error Check spawn: Configuracion invalida
\n
"
);
}
else
if
(
local_state
==
MALL_SPAWN_ADAPT_POSTPONE
)
{
global_state
=
local_state
;
}
else
{
//FIXMENOW Error con Merge Shrink + Pthreads -- Parece algo con updte de estados en TODOS los procesos
printf
(
"Error Check spawn: Configuracion invalida State = %d
\n
"
,
local_state
);
MPI_Abort
(
MPI_COMM_WORLD
,
-
1
);
return
-
10
;
}
...
...
@@ -107,11 +110,28 @@ int check_spawn_state(MPI_Comm *child, MPI_Comm comm, int data_dist_completed, d
generic_spawn
(
child
,
MALL_DIST_COMPLETED
);
global_state
=
get_spawn_state
(
spawn_data
->
spawn_is_async
);
}
if
(
global_state
==
MALL_SPAWN_COMPLETED
||
global_state
==
MALL_
DIST
_ADAPTED
)
if
(
global_state
==
MALL_SPAWN_COMPLETED
||
global_state
==
MALL_
SPAWN
_ADAPTED
)
deallocate_spawn_data
();
return
global_state
;
}
/*
* Elimina la bandera bloqueante MALL_SPAWN_ADAPT_POSTPONE para los hilos
* auxiliares. Esta bandera los bloquea para que el metodo Merge shrink no
* avance hasta que se complete la redistribucion de datos. Por tanto,
* al modificar la bandera los hilos pueden continuar.
*
* Por seguridad se comprueba que no se realice el cambio a la bandera a
* no ser que se cumplan las 3 condiciones.
*/
void
unset_spawn_postpone_flag
(
int
outside_state
)
{
int
local_state
=
get_spawn_state
(
spawn_data
->
spawn_is_async
);
if
(
local_state
==
MALL_SPAWN_ADAPT_POSTPONE
&&
outside_state
==
MALL_SPAWN_ADAPT_PENDING
&&
spawn_data
->
spawn_is_async
)
{
set_spawn_state
(
MALL_SPAWN_PENDING
,
MALL_SPAWN_PTHREAD
);
}
}
/*
* Funcion bloqueante de los hijos para asegurar que todas las tareas del paso
* de creacion de los hijos se terminan correctamente.
...
...
@@ -136,7 +156,7 @@ void malleability_connect_children(int myId, int numP, int root, MPI_Comm comm,
baseline
(
*
spawn_data
,
parents
);
break
;
case
MALL_SPAWN_MERGE
:
spawn_data
->
target_qty
+=
*
numP_parents
;
spawn_data
->
target_qty
+=
spawn_data
->
initial_qty
;
merge
(
*
spawn_data
,
parents
,
MALL_NOT_STARTED
);
break
;
}
...
...
@@ -285,9 +305,8 @@ void generic_spawn(MPI_Comm *child, int data_stage) {
break
;
}
// END WORK
set_spawn_state
(
local_state
,
spawn_data
->
spawn_is_async
);
end_time
=
MPI_Wtime
();
set_spawn_state
(
local_state
,
spawn_data
->
spawn_is_async
);
}
...
...
@@ -330,6 +349,7 @@ void* thread_work(void* arg) {
// El grupo de procesos se terminara de juntar tras la redistribucion de datos
repeat
=
1
;
local_state
=
wait_wakeup
();
printf
(
"Hilos despiertan
\n
"
);
}
if
(
repeat
)
generic_spawn
(
returned_comm
,
MALL_DIST_COMPLETED
);
...
...
@@ -355,8 +375,7 @@ int check_single_state(MPI_Comm comm, int global_state) {
global_state
=
MALL_SPAWN_PENDING
;
set_spawn_state
(
global_state
,
MALL_SPAWN_PTHREAD
);
//int threads_not_spawned = pthread_equal(pthread_self(), spawn_thread);
if
(
spawn_data
->
myId
!=
spawn_data
->
root
)
{
//&& threads_not_spawned) {
if
(
spawn_data
->
myId
!=
spawn_data
->
root
)
{
allocate_thread_spawn
(
spawn_data
);
}
}
...
...
@@ -376,7 +395,7 @@ int check_generic_state(MPI_Comm comm, MPI_Comm *child, int local_state, double
int
global_state
;
MPI_Allreduce
(
&
local_state
,
&
global_state
,
1
,
MPI_INT
,
MPI_MIN
,
comm
);
if
(
global_state
==
MALL_SPAWN_COMPLETED
||
global_state
==
MALL_
DIST
_ADAPTED
)
{
if
(
global_state
==
MALL_SPAWN_COMPLETED
||
global_state
==
MALL_
SPAWN
_ADAPTED
)
{
set_spawn_state
(
global_state
,
MALL_SPAWN_PTHREAD
);
*
child
=
*
returned_comm
;
deallocate_spawn_data
(
spawn_data
);
...
...
@@ -384,15 +403,3 @@ int check_generic_state(MPI_Comm comm, MPI_Comm *child, int local_state, double
}
return
global_state
;
}
/*
* Permite a una reduccion merge asincrona
* de procesos que estaba a la espera de que la
* distribucion de los datos se completase continue.
*/
int
check_merge_shrink_state
()
{
// FIXME Pasar como caso especial para evitar iteracion no necesaria
int
global_state
=
MALL_SPAWN_PENDING
;
set_spawn_state
(
global_state
,
MALL_SPAWN_PTHREAD
);
return
global_state
;
}
Codes/malleability/spawn_methods/GenericSpawn.h
View file @
7cbd92e2
...
...
@@ -7,10 +7,11 @@
#include "../malleabilityDataStructures.h"
int
init_spawn
(
char
*
argv
,
int
num_cpus
,
int
num_nodes
,
char
*
nodelist
,
int
myId
,
int
initial_qty
,
int
target_qty
,
int
root
,
int
type_dist
,
int
spawn_method
,
int
spawn_strategies
,
MPI_Comm
comm
,
MPI_Comm
*
child
);
int
check_spawn_state
(
MPI_Comm
*
child
,
MPI_Comm
comm
,
int
data_dist_completed
,
double
*
real_time
);
int
check_spawn_state
(
MPI_Comm
*
child
,
MPI_Comm
comm
,
double
*
real_time
);
void
malleability_connect_children
(
int
myId
,
int
numP
,
int
root
,
MPI_Comm
comm
,
int
*
numP_parents
,
int
*
root_parents
,
MPI_Comm
*
parents
);
void
unset_spawn_postpone_flag
(
int
outside_state
);
int
malleability_spawn_contains_strat
(
int
spawn_strategies
,
int
strategy
,
int
*
result
);
#endif
Codes/malleability/spawn_methods/Merge.c
View file @
7cbd92e2
...
...
@@ -18,7 +18,7 @@ int merge(Spawn_data spawn_data, MPI_Comm *child, int data_state) {
if
(
spawn_data
.
initial_qty
>
spawn_data
.
target_qty
)
{
//Shrink
if
(
data_state
==
MALL_DIST_COMPLETED
)
{
merge_adapt_shrink
(
spawn_data
.
target_qty
,
child
,
spawn_data
.
comm
,
spawn_data
.
myId
);
local_state
=
MALL_
DIST
_ADAPTED
;
local_state
=
MALL_
SPAWN
_ADAPTED
;
}
else
{
local_state
=
MALL_SPAWN_ADAPT_POSTPONE
;
}
...
...
@@ -26,6 +26,7 @@ int merge(Spawn_data spawn_data, MPI_Comm *child, int data_state) {
MPI_Comm_get_parent
(
&
intercomm
);
is_children_group
=
intercomm
==
MPI_COMM_NULL
?
0
:
1
;
baseline
(
spawn_data
,
child
);
merge_adapt_expand
(
child
,
is_children_group
);
local_state
=
MALL_SPAWN_COMPLETED
;
...
...
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