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Commit 01e07630 authored by iker_martin's avatar iker_martin
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Added many changes to allow correct execution of merge spawn. Asynchronous... 

Added many changes to allow correct execution of merge spawn. Asynchronous merge requires additional changes.
parent 7ea5eebb
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Main/ConjugateGradient.c
View file @ 01e07630
...@@ -9,6 +9,8 @@ ...@@ -9,6 +9,8 @@
#include <string.h> #include <string.h>
#include "../malleability/malleabilityManager.h" #include "../malleability/malleabilityManager.h"
#include<unistd.h>
//#define ONLY_SYM 0 //#define ONLY_SYM 0
#define ROOT 0 #define ROOT 0
//#define DEBUG 0 //#define DEBUG 0
...@@ -44,6 +46,8 @@ struct Dist_data { ...@@ -44,6 +46,8 @@ struct Dist_data {
MPI_Datatype scalars, arrays; MPI_Datatype scalars, arrays;
}; };
void dumb(Compute_data *computeData, struct Dist_data *dist_data); //FIXME Delte me
void init_app(Compute_data *computeData, struct Dist_data *dist_data, char* argv[]); void init_app(Compute_data *computeData, struct Dist_data *dist_data, char* argv[]);
void get_mat_dist(Compute_data *computeData, struct Dist_data dist_data, SparseMatrix mat); void get_mat_dist(Compute_data *computeData, struct Dist_data dist_data, SparseMatrix mat);
void get_rows_dist(Compute_data *computeData, int numP, int n); void get_rows_dist(Compute_data *computeData, int numP, int n);
...@@ -51,7 +55,7 @@ void mat_alloc(Compute_data *computeData, SparseMatrix mat, struct Dist_data dis ...@@ -51,7 +55,7 @@ void mat_alloc(Compute_data *computeData, SparseMatrix mat, struct Dist_data dis
void computeSolution(Compute_data computeData, double **subsol, SparseMatrix mat, int myId, double **full_vec); void computeSolution(Compute_data computeData, double **subsol, SparseMatrix mat, int myId, double **full_vec);
void pre_compute(Compute_data *computeData, struct Dist_data dist_data, double *subsol, double *full_vec); void pre_compute(Compute_data *computeData, struct Dist_data dist_data, double *subsol, double *full_vec);
int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm); int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm);
void free_computeData(Compute_data *computeData); void free_computeData(Compute_data *computeData, int terminate);
//===================================MALLEABILITY FUNCTIONS==================================================== //===================================MALLEABILITY FUNCTIONS====================================================
...@@ -64,6 +68,7 @@ void send_matrix(struct Dist_data dist_data, Compute_data computeData, int rootB ...@@ -64,6 +68,7 @@ void send_matrix(struct Dist_data dist_data, Compute_data computeData, int rootB
void dist_new(struct Dist_data *dist_data, Compute_data *computeData); void dist_new(struct Dist_data *dist_data, Compute_data *computeData);
void recv_matrix(struct Dist_data *dist_data, Compute_data *computeData, int idI, int idE, void recv_matrix(struct Dist_data *dist_data, Compute_data *computeData, int idI, int idE,
int *sendcounts, int *recvcounts,int *sdispls, int *rdispls); int *sendcounts, int *recvcounts,int *sdispls, int *rdispls);
void update_dist_data(struct Dist_data *dist_data);
//---------------------------------------------------------------------------------------------------- //----------------------------------------------------------------------------------------------------
void get_dist(int total_r, int id, int numP, struct Dist_data *dist_data); void get_dist(int total_r, int id, int numP, struct Dist_data *dist_data);
void set_counts(int id, int numP, struct Dist_data data_dist, int *sendcounts); void set_counts(int id, int numP, struct Dist_data data_dist, int *sendcounts);
...@@ -101,11 +106,10 @@ int main (int argc, char *argv[]) { ...@@ -101,11 +106,10 @@ int main (int argc, char *argv[]) {
MPI_Comm_rank(MPI_COMM_WORLD, &myId); MPI_Comm_rank(MPI_COMM_WORLD, &myId);
printf("Nuevo set %d/%d\n", myId, numP); printf("Nuevo set %d/%d\n", myId, numP);
dist_data.myId = myId;
dist_data.numP = numP;
dist_data.comm = MPI_COMM_WORLD; dist_data.comm = MPI_COMM_WORLD;
int new_group = init_malleability(myId, numP, ROOT, dist_data.comm, argv[0], nodelist, num_cpus, num_nodes); int new_group = init_malleability(myId, numP, ROOT, dist_data.comm, argv[0], nodelist, num_cpus, num_nodes);
update_dist_data(&dist_data);
if( !new_group ) { //First set of processes if( !new_group ) { //First set of processes
init_app(&computeData, &dist_data, argv); init_app(&computeData, &dist_data, argv);
...@@ -115,17 +119,16 @@ int main (int argc, char *argv[]) { ...@@ -115,17 +119,16 @@ int main (int argc, char *argv[]) {
} }
if ( computeData.iter == 0 ) { //if(computeData.iter==0)
terminate = compute(&computeData, &dist_data, sm); terminate = compute(&computeData, &dist_data, sm);
}
terminate = 1;
if(myId == ROOT && terminate) { if(myId == ROOT && terminate) {
printf ("End(%d) --> (%d,%20.10e)\n", computeData.n, computeData.iter, computeData.tol); printf ("End(%d) --> (%d,%20.10e)\n", computeData.n, computeData.iter, computeData.tol);
} }
// End of CG // End of CG
free_malleability(); free_malleability();
free_computeData(&computeData); free_computeData(&computeData, 1);
MPI_Finalize(); MPI_Finalize();
} }
...@@ -239,7 +242,6 @@ void get_rows_dist(Compute_data *computeData, int numP, int n) { ...@@ -239,7 +242,6 @@ void get_rows_dist(Compute_data *computeData, int numP, int n) {
// Fill dist_rows and dist_elem so each process can make ScatterV or GatherV calls // Fill dist_rows and dist_elem so each process can make ScatterV or GatherV calls
for(i=0; i<numP; i++) { for(i=0; i<numP; i++) {
get_dist(n, i, numP, &dist_data); get_dist(n, i, numP, &dist_data);
computeData->dist_rows[i] = dist_data.tamBl; computeData->dist_rows[i] = dist_data.tamBl;
// Fill displacements // Fill displacements
...@@ -272,9 +274,9 @@ void mat_alloc(Compute_data *computeData, SparseMatrix mat, struct Dist_data dis ...@@ -272,9 +274,9 @@ void mat_alloc(Compute_data *computeData, SparseMatrix mat, struct Dist_data dis
MPI_Scatterv((mat.vptr)+1, computeData->dist_rows, computeData->displs_rows, MPI_INT, (computeData->subm.vptr)+1, dist_data.tamBl, MPI_INT, ROOT, MPI_COMM_WORLD); MPI_Scatterv((mat.vptr)+1, computeData->dist_rows, computeData->displs_rows, MPI_INT, (computeData->subm.vptr)+1, dist_data.tamBl, MPI_INT, ROOT, MPI_COMM_WORLD);
CreateInts(&(computeData->vlen), dist_data.tamBl+1); CreateInts(&(computeData->vlen), dist_data.tamBl);
for(i=0; i<dist_data.tamBl+1; i++) { for(i=0; i<dist_data.tamBl; i++) {
computeData->vlen[i] = computeData->subm.vptr[i]; computeData->vlen[i] = computeData->subm.vptr[i+1];
} }
TransformLengthtoHeader(computeData->subm.vptr, computeData->subm.dim1); // The array is converted from vlen to vptr TransformLengthtoHeader(computeData->subm.vptr, computeData->subm.dim1); // The array is converted from vlen to vptr
elems = computeData->subm.vptr[dist_data.tamBl]; elems = computeData->subm.vptr[dist_data.tamBl];
...@@ -400,9 +402,6 @@ int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm) { ...@@ -400,9 +402,6 @@ int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm) {
while ((computeData->iter < computeData->maxiter) && (computeData->tol > computeData->umbral)) { while ((computeData->iter < computeData->maxiter) && (computeData->tol > computeData->umbral)) {
//while (computeData->tol > computeData->umbral) { //while (computeData->tol > computeData->umbral) {
if (computeData->iter == 3) { state = malleability_checkpoint(); }
if (dist_data->myId == 0) {printf("TEST %d\n", computeData->iter);}
if ((state == MALL_COMPLETED && sm == 0) || state == MALL_ZOMBIE) {break;}
// if(dist_data->myId == ROOT) printf ("(%d,%20.10e)\n", computeData->iter, computeData->tol); // if(dist_data->myId == ROOT) printf ("(%d,%20.10e)\n", computeData->iter, computeData->tol);
...@@ -413,22 +412,35 @@ int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm) { ...@@ -413,22 +412,35 @@ int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm) {
ProdSparseMatrixVector (computeData->subm, computeData->d_full, computeData->z); // z += A * d_full ProdSparseMatrixVector (computeData->subm, computeData->d_full, computeData->z); // z += A * d_full
#endif #endif
computeData->rho = ddot (&(dist_data->tamBl), computeData->d, &IONE, computeData->z, &IONE); // rho = (d * z) computeData->rho = ddot (&(dist_data->tamBl), computeData->d, &IONE, computeData->z, &IONE); // rho = (d * z)
MPI_Allreduce(MPI_IN_PLACE, &computeData->rho, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); // Reduce(rho, SUM) MPI_Allreduce(MPI_IN_PLACE, &computeData->rho, 1, MPI_DOUBLE, MPI_SUM, dist_data->comm); // Reduce(rho, SUM)
computeData->rho = computeData->beta / computeData->rho; // rho = beta / aux computeData->rho = computeData->beta / computeData->rho; // rho = beta / aux
daxpy (&(dist_data->tamBl), &computeData->rho, computeData->d, &IONE, computeData->vec, &IONE); // x += rho * d daxpy (&(dist_data->tamBl), &computeData->rho, computeData->d, &IONE, computeData->vec, &IONE); // x += rho * d
computeData->rho = -computeData->rho; computeData->rho = -computeData->rho;
daxpy (&(dist_data->tamBl), &computeData->rho, computeData->z, &IONE, computeData->res, &IONE); // res -= rho * z daxpy (&(dist_data->tamBl), &computeData->rho, computeData->z, &IONE, computeData->res, &IONE); // res -= rho * z
computeData->alpha = computeData->beta; // alpha = beta computeData->alpha = computeData->beta; // alpha = beta
computeData->beta = ddot (&(dist_data->tamBl), computeData->res, &IONE, computeData->res, &IONE); // beta = res' * res computeData->beta = ddot (&(dist_data->tamBl), computeData->res, &IONE, computeData->res, &IONE); // beta = res' * res
MPI_Allreduce(MPI_IN_PLACE, &computeData->beta, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); // Reduce(beta, SUM) MPI_Allreduce(MPI_IN_PLACE, &computeData->beta, 1, MPI_DOUBLE, MPI_SUM, dist_data->comm); // Reduce(beta, SUM)
computeData->alpha = computeData->beta / computeData->alpha; // alpha = beta / alpha computeData->alpha = computeData->beta / computeData->alpha; // alpha = beta / alpha
dscal (&(dist_data->tamBl), &computeData->alpha, computeData->d, &IONE); // d = alpha * d dscal (&(dist_data->tamBl), &computeData->alpha, computeData->d, &IONE); // d = alpha * d
daxpy (&(dist_data->tamBl), &DONE, computeData->res, &IONE, computeData->d, &IONE); // d += res daxpy (&(dist_data->tamBl), &DONE, computeData->res, &IONE, computeData->d, &IONE); // d += res
if(computeData->iter==3) dumb(computeData,dist_data);
MPI_Allgatherv(computeData->d, dist_data->tamBl, MPI_DOUBLE, computeData->d_full, MPI_Allgatherv(computeData->d, dist_data->tamBl, MPI_DOUBLE, computeData->d_full,
computeData->dist_rows, computeData->displs_rows, MPI_DOUBLE, MPI_COMM_WORLD); // d_full = Gather(d) computeData->dist_rows, computeData->displs_rows, MPI_DOUBLE, dist_data->comm); // d_full = Gather(d)
computeData->tol = sqrt (computeData->beta); // tol = sqrt(beta) = norm (res) computeData->tol = sqrt (computeData->beta); // tol = sqrt(beta) = norm (res)
computeData->iter++; computeData->iter++;
if (computeData->iter == 3) {
state = malleability_checkpoint();
if ((state == MALL_COMPLETED && sm == 0) || state == MALL_ZOMBIE) {break;}
else if(state == MALL_COMPLETED) {
dumb(computeData,dist_data);
free_computeData(computeData, 0);
update_dist_data(dist_data);
dist_new(dist_data, computeData);
}
}
} }
#ifdef DEBUG #ifdef DEBUG
if(dist_data->myId == ROOT) printf ("Ended loop\n"); if(dist_data->myId == ROOT) printf ("Ended loop\n");
...@@ -436,8 +448,23 @@ int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm) { ...@@ -436,8 +448,23 @@ int compute(Compute_data *computeData, struct Dist_data *dist_data, int sm) {
return ended_loop; return ended_loop;
} }
void dumb(Compute_data *computeData, struct Dist_data *dist_data) {
int i;
sleep(dist_data->myId+dist_data->numP);
printf("P%d -tamBl=%d D=", dist_data->myId, dist_data->tamBl);
/*for(i=0; i<dist_data->tamBl; i++) {
printf("%lf ", computeData->d[i]);
}*/
printf("\n");
printf("D_full=");
for(i=0; i<computeData->n; i++) {
printf("%lf ", computeData->d_full[i]);
}
printf("\n");
fflush(stdout); MPI_Barrier(dist_data->comm);
}
void free_computeData(Compute_data *computeData) { void free_computeData(Compute_data *computeData, int terminate) {
if(computeData->res != NULL) { if(computeData->res != NULL) {
RemoveDoubles (&computeData->res); RemoveDoubles (&computeData->res);
} }
...@@ -452,7 +479,7 @@ void free_computeData(Compute_data *computeData) { ...@@ -452,7 +479,7 @@ void free_computeData(Compute_data *computeData) {
} }
if(computeData->d_full != NULL) { if(computeData->d_full != NULL && terminate) {
RemoveDoubles (&computeData->d_full); RemoveDoubles (&computeData->d_full);
} }
if(computeData->subm.vptr != NULL) { if(computeData->subm.vptr != NULL) {
...@@ -500,52 +527,23 @@ int dist_old(struct Dist_data *dist_data, Compute_data *computeData, int num_chi ...@@ -500,52 +527,23 @@ int dist_old(struct Dist_data *dist_data, Compute_data *computeData, int num_chi
set_malleability_configuration(sm, ss, phy_dist, rm, rs); set_malleability_configuration(sm, ss, phy_dist, rm, rs);
set_children_number(num_children); set_children_number(num_children);
malleability_add_data(&(computeData->iter), 1, MAL_INT, 1, 1); malleability_add_data(&(computeData->n), 1, MAL_INT, MAL_DATA_ALONE, 1, 1);
//malleability_add_data(&(computeData->tol), 1, MAL_DOUBLE, 1, 1); malleability_add_data(&(computeData->iter), 1, MAL_INT, MAL_DATA_ALONE, 1, 1);
//malleability_add_data(&(computeData->beta), 1, MAL_DOUBLE, 1, 1); malleability_add_data(&(computeData->tol), 1, MAL_DOUBLE, MAL_DATA_ALONE, 1, 1);
//malleability_add_data(&(computeData->umbral), 1, MAL_DOUBLE, 1, 1); malleability_add_data(&(computeData->beta), 1, MAL_DOUBLE, MAL_DATA_ALONE, 1, 1);
/* malleability_add_data(&(computeData->umbral), 1, MAL_DOUBLE, MAL_DATA_ALONE, 1, 1);
malleability_add_data(&(computeData->vec), computeData->n, MAL_DOUBLE, 0, 1);
malleability_add_data(&(computeData->res), computeData->n, MAL_DOUBLE, 0, 1);
malleability_add_data(&(computeData->z), computeData->n, MAL_DOUBLE, 0, 1);
malleability_add_data(&(computeData->d_full), computeData->n, MAL_DOUBLE, 1, 1);
malleability_add_data(&(computeData->vlen), computeData->n, MAL_INT, 1, 1); //FIXME Ultimo valor puede sere asinc
malleability_add_data(&(computeData->subm.vpos), computeData->n, MAL_INT, 1, 1);
malleability_add_data(&(computeData->subm.vval), computeData->n, MAL_DOUBLE, 1, 1);
*/
}
/* malleability_add_data(computeData->d_full, computeData->n, MAL_DOUBLE, MAL_DATA_ALONE, 1, 1);
MPI_Bcast(computeData->d_full, computeData->n, MPI_DOUBLE, rootBcast, dist_data.comm_children);
MPI_Alltoallv(computeData->res, sendcounts, sdispls, dist_data.arrays, NULL, recvcounts, rdispls, MPI_INT, dist_data.comm_children);
*/
void send_matrix(struct Dist_data dist_data, Compute_data computeData, int rootBcast, int numP_child, int idI, int idE,
int *sendcounts, int *recvcounts,int *sdispls, int *rdispls) {
int i;
TransformHeadertoLength(computeData.subm.vptr, computeData.subm.dim1); // De vptr a vlen malleability_add_data(computeData->vec, computeData->n, MAL_DOUBLE, MAL_DATA_ALONE, 0, 1);
// Distribuir vlen con los hijos malleability_add_data(computeData->res, computeData->n, MAL_DOUBLE, MAL_DATA_ALONE, 0, 1);
MPI_Alltoallv(computeData.subm.vptr+1, sendcounts, sdispls, MPI_INT, NULL, recvcounts, rdispls, MPI_INT, dist_data.comm_children); malleability_add_data(computeData->z, computeData->n, MAL_DOUBLE, MAL_DATA_ALONE, 0, 1);
TransformLengthtoHeader(computeData.subm.vptr, computeData.subm.dim1); // De vlen a vptr
// Calcular cuantos elementos se van a enviar a cada proceso hijo //FIXME SIguientes valores pueden ser asincronos
if(idI == 0 && sendcounts[0] > 0) { malleability_add_data(computeData->vlen, computeData->n, MAL_INT, 1+MAL_DATA_INDEPENDENT, 0, 1);
sendcounts[0] = computeData.subm.vptr[sdispls[0] + sendcounts[0]] - computeData.subm.vptr[sdispls[0]];
idI++;
}
for(i=idI; i<idE; i++) {
if(sendcounts[i] > 0) {
sendcounts[i] = computeData.subm.vptr[sdispls[i] + sendcounts[i]] - computeData.subm.vptr[sdispls[i]];
}
sdispls[i] = sdispls[i-1] + sendcounts[i-1];
}
//print_counts(dist_data, sendcounts, sdispls, numP_child, "Send");
/* COMUNICACION DE DATOS */ malleability_add_data(computeData->subm.vpos, computeData->n, MAL_INT, 1+MAL_DATA_DEPENDENT, 0, 1);
MPI_Alltoallv(computeData.subm.vpos, sendcounts, sdispls, MPI_INT, NULL, recvcounts, rdispls, MPI_INT, dist_data.comm_children); malleability_add_data(computeData->subm.vval, computeData->n, MAL_DOUBLE, 1+MAL_DATA_DEPENDENT, 0, 1);
MPI_Alltoallv(computeData.subm.vval, sendcounts, sdispls, MPI_DOUBLE, NULL, recvcounts, rdispls, MPI_DOUBLE, dist_data.comm_children);
} }
/* /*
...@@ -567,80 +565,57 @@ void send_matrix(struct Dist_data dist_data, Compute_data computeData, int rootB ...@@ -567,80 +565,57 @@ void send_matrix(struct Dist_data dist_data, Compute_data computeData, int rootB
* *
*/ */
void dist_new(struct Dist_data *dist_data, Compute_data *computeData) { void dist_new(struct Dist_data *dist_data, Compute_data *computeData) {
int IONE = 1, i;
void *value = NULL; void *value = NULL;
malleability_get_data(&value, 0, 1, 1); malleability_get_data(&value, 0, 1, 1);
computeData->n = *((int *)value);
malleability_get_data(&value, 1, 1, 1);
computeData->iter = *((int *)value); computeData->iter = *((int *)value);
/* malleability_get_data(&value, 1, 1, 1);
computeData->tol = *((double *)value);
malleability_get_data(&value, 2, 1, 1); malleability_get_data(&value, 2, 1, 1);
computeData->beta = *((double *)value); computeData->tol = *((double *)value);
malleability_get_data(&value, 3, 1, 1); malleability_get_data(&value, 3, 1, 1);
computeData->beta = *((double *)value);
malleability_get_data(&value, 4, 1, 1);
computeData->umbral = *((double *)value); computeData->umbral = *((double *)value);
*/
/* malleability_get_data(&value, 5, 1, 1);
computeData->d_full = ((double *)value);
malleability_get_data(&value, 0, 0, 1); malleability_get_data(&value, 0, 0, 1);
computeData->vec = ((double *)value); computeData->vec = ((double *)value);
malleability_get_data(&value, 1, 0, 1); malleability_get_data(&value, 1, 0, 1);
computeData->res = ((double *)value); computeData->res = ((double *)value);
malleability_get_data(&value, 2, 0, 1); malleability_get_data(&value, 2, 0, 1);
computeData->z = ((double *)value); computeData->z = ((double *)value);
malleability_get_data(&value, 4, 1, 1);
computeData->d_full = ((double *)value);
malleability_get_data(&value, 5, 1, 1);
computeData->subm.vptr = ((int *)value);
malleability_get_data(&value, 6, 1, 1);
computeData->subm.vpos = ((int *)value);
malleability_get_data(&value, 7, 1, 1);
computeData->subm.vval = ((double *)value);
TransformLengthtoHeader(computeData->subm.vptr, computeData->subm.dim1); // De vlen a vptr
*/
}
/*
MPI_Bcast(computeData->d_full, computeData->n, MPI_DOUBLE, ROOT, dist_data->comm_parents); // Recibir vectores RES y D_FULL
MPI_Alltoallv(aux, sendcounts, sdispls, MPI_INT, computeData->res, recvcounts, rdispls, dist_data->arrays, dist_data->comm_parents);
dcopy (&(dist_data->tamBl), &(computeData->d_full[dist_data->ini]), &IONE, computeData->d, &IONE); // Copia parcial de D_FULL a D
*/
void recv_matrix(struct Dist_data *dist_data, Compute_data *computeData, int idI, int idE,
int *sendcounts, int *recvcounts,int *sdispls, int *rdispls) {
int i;
double *aux;
int *aux_int, elems;
Compute_data dist_parents;
/* PREPARAR DATOS DE RECEPCION SOBRE MATRIZ */
get_rows_dist(&dist_parents, dist_data->numP_parents, computeData->n);
get_dist(computeData->n, dist_data->myId, dist_data->numP, dist_data);
get_rows_dist(computeData, dist_data->numP, computeData->n); get_rows_dist(computeData, dist_data->numP, computeData->n);
CreateSparseMatrixVptr(&(computeData->subm), dist_data->tamBl, computeData->n, 0); CreateDoubles(&computeData->d, dist_data->tamBl);
dcopy (&(dist_data->tamBl), &(computeData->d_full[dist_data->ini]), &IONE, computeData->d, &IONE); // d = d_full[ini] to d_full[ini+tamBl]
MPI_Alltoallv(aux_int, sendcounts, sdispls, MPI_INT, (computeData->subm.vptr)+1, recvcounts, rdispls, MPI_INT, dist_data->comm_parents);
TransformLengthtoHeader(computeData->subm.vptr, computeData->subm.dim1); // De vlen a vptr malleability_get_data(&value, 3, 0, 1);
elems = computeData->subm.vptr[dist_data->tamBl]; computeData->vlen = ((int *)value);
CreateSparseMatrixValues(&(computeData->subm), dist_data->tamBl, computeData->n, elems, 0); CreateSparseMatrixVptr(&(computeData->subm), dist_data->tamBl, computeData->n, 0);
computeData->subm.vptr[0] = 0;
// Calcular cuantos elementos se van a recibir de cada proceso padre for(i=0; i<dist_data->tamBl; i++) {
if(idI == 0 && recvcounts[0] > 0) { computeData->subm.vptr[i+1] = computeData->vlen[i];
recvcounts[0] = computeData->subm.vptr[rdispls[0] + recvcounts[0]] - computeData->subm.vptr[rdispls[0]];
idI++;
}
for(i=idI; i<idE; i++) {
if(recvcounts[i] > 0) {
recvcounts[i] = computeData->subm.vptr[rdispls[i] + recvcounts[i]] - computeData->subm.vptr[rdispls[i]];
}
rdispls[i] = rdispls[i-1] + recvcounts[i-1];
} }
//print_counts(*dist_data, recvcounts, rdispls, numP_parents, "Recv"); TransformLengthtoHeader(computeData->subm.vptr, computeData->subm.dim1); // The array is converted from vlen to vptr
/* COMUNICACION DE DATOS */ malleability_get_data(&value, 4, 0, 1);
MPI_Alltoallv(aux_int, sendcounts, sdispls, MPI_INT, computeData->subm.vpos, recvcounts, rdispls, MPI_INT, dist_data->comm_parents); computeData->subm.vpos = ((int *)value);
MPI_Alltoallv(aux, sendcounts, sdispls, MPI_DOUBLE, computeData->subm.vval, recvcounts, rdispls, MPI_DOUBLE, dist_data->comm_parents); malleability_get_data(&value, 5, 0, 1);
computeData->subm.vval = ((double *)value);
}
free(dist_parents.dist_rows); void update_dist_data(struct Dist_data *dist_data) {
free(dist_parents.displs_rows); int myId, numP;
get_malleability_user_comm(&(dist_data->comm));
MPI_Comm_size(dist_data->comm, &numP);
MPI_Comm_rank(dist_data->comm, &myId);
dist_data->myId = myId;
dist_data->numP = numP;
} }
/* /*
......
malleability/CommDist.c
View file @ 01e07630
...@@ -5,18 +5,18 @@ ...@@ -5,18 +5,18 @@
#include "distribution_methods/block_distribution.h" #include "distribution_methods/block_distribution.h"
#include "CommDist.h" #include "CommDist.h"
void prepare_redistribution(int qty, int myId, int numP, int numO, int is_children_group, int is_intercomm, char **recv, struct Counts *s_counts, struct Counts *r_counts); void prepare_redistribution(int qty, int mal_type, int myId, int numP, int numO, int is_children_group, int is_intercomm, void **recv, struct Counts *s_counts, struct Counts *r_counts);
void check_requests(struct Counts s_counts, struct Counts r_counts, MPI_Request **requests, size_t *request_qty); void check_requests(struct Counts s_counts, struct Counts r_counts, MPI_Request **requests, size_t *request_qty);
void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm); void sync_point2point(void *send, void *recv, int mal_type, int is_intercomm, int myId, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm);
void sync_rma(char *send, char *recv, struct Counts r_counts, int tamBl, MPI_Comm comm, int red_method);
void sync_rma_lock(char *recv, struct Counts r_counts, MPI_Win win);
void sync_rma_lockall(char *recv, struct Counts r_counts, MPI_Win win);
void async_point2point(void *send, void *recv, MPI_Datatype datatype, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm, MPI_Request *requests);
void async_point2point(char *send, char *recv, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm, MPI_Request *requests); void perform_manual_communication(void *send, void *recv, int mal_type, int myId, struct Counts s_counts, struct Counts r_counts);
void perform_manual_communication(char *send, char *recv, int myId, struct Counts s_counts, struct Counts r_counts); void *ind_send, *ind_recv; //FIXME Borrar
void recalculate_counts(struct Counts *counts, int *array, void **recv, int mal_type);
int recalculate_elems(int *array, int ini, int fin);
/* /*
* Reserva memoria para un vector de hasta "qty" elementos. * Reserva memoria para un vector de hasta "qty" elementos.
...@@ -67,49 +67,70 @@ void malloc_comm_array(char **array, int qty, int myId, int numP) { ...@@ -67,49 +67,70 @@ void malloc_comm_array(char **array, int qty, int myId, int numP) {
* *
* returns: An integer indicating if the operation has been completed(TRUE) or not(FALSE). //FIXME In this case is always true... * returns: An integer indicating if the operation has been completed(TRUE) or not(FALSE). //FIXME In this case is always true...
*/ */
int sync_communication(char *send, char **recv, int qty, int myId, int numP, int numO, int is_children_group, int red_method, MPI_Comm comm) { int sync_communication(void *send, void **recv, int qty, int mal_type, int dependency, int myId, int numP, int numO, int is_children_group, int red_method, MPI_Comm comm) {
int is_intercomm, aux_comm_used = 0; int is_intercomm, aux_comm_used = 0;
struct Counts s_counts, r_counts; struct Counts s_counts, r_counts;
struct Dist_data dist_data; struct Dist_data dist_data;
MPI_Datatype datatype;
MPI_Comm aux_comm = MPI_COMM_NULL; MPI_Comm aux_comm = MPI_COMM_NULL;
/* PREPARE COMMUNICATION */ /* PREPARE COMMUNICATION */
MPI_Comm_test_inter(comm, &is_intercomm); MPI_Comm_test_inter(comm, &is_intercomm);
prepare_redistribution(qty, myId, numP, numO, is_children_group, is_intercomm, recv, &s_counts, &r_counts); prepare_redistribution(qty, mal_type, myId, numP, numO, is_children_group, is_intercomm, recv, &s_counts, &r_counts);
/*
if(is_intercomm) { if(is_intercomm) {
MPI_Intercomm_merge(comm, is_children_group, &aux_comm); MPI_Intercomm_merge(comm, is_children_group, &aux_comm);
aux_comm_used = 1; aux_comm_used = 1;
} }
/* PERFORM COMMUNICATION */ */
switch(red_method) { if(mal_type == MAL_INT) {
datatype = MPI_INT;
} else if(mal_type == MAL_DOUBLE) {
datatype = MPI_DOUBLE;
} else if(mal_type == MAL_CHAR) {
datatype = MPI_CHAR;
} else {
printf("Malleability -- Redistribution type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
}
case MALL_RED_RMA_LOCKALL: if(dependency == 1+MAL_DATA_DEPENDENT) {
case MALL_RED_RMA_LOCK:
if(is_children_group) { if(is_children_group) {
get_block_dist(qty, myId, numP, &dist_data); recalculate_counts(&r_counts, (int *) ind_recv, recv, mal_type);
} else { } else {
get_block_dist(qty, myId, numO, &dist_data); recalculate_counts(&s_counts, (int *) ind_send, recv, mal_type);
if(!is_intercomm) {
recalculate_counts(&r_counts, (int *) ind_recv, recv, mal_type);
}
}
} }
if(is_intercomm) {
MPI_Intercomm_merge(comm, is_children_group, &aux_comm);
aux_comm_used = 1;
} else { aux_comm = comm; }
sync_rma(send, *recv, r_counts, dist_data.tamBl, aux_comm, red_method);
break;
/* PERFORM COMMUNICATION */
switch(red_method) {
case MALL_RED_POINT: case MALL_RED_POINT:
sync_point2point(send, *recv, is_intercomm, myId, s_counts, r_counts, aux_comm); sync_point2point(send, *recv, mal_type, is_intercomm, myId, s_counts, r_counts, aux_comm);
break; break;
case MALL_RED_BASELINE: case MALL_RED_BASELINE:
default: default:
MPI_Alltoallv(send, s_counts.counts, s_counts.displs, MPI_CHAR, *recv, r_counts.counts, r_counts.displs, MPI_CHAR, aux_comm); MPI_Alltoallv(send, s_counts.counts, s_counts.displs, datatype, *recv, r_counts.counts, r_counts.displs, datatype, comm);
break; break;
} }
if(aux_comm_used) { if(aux_comm_used) {
MPI_Comm_free(&aux_comm); MPI_Comm_free(&aux_comm);
} }
if(dependency == 1+MAL_DATA_INDEPENDENT) {
if(is_children_group) {
ind_recv = *recv;
} else {
ind_send = send;
if(!is_intercomm) {
ind_recv = *recv;
}
}
}
freeCounts(&s_counts); freeCounts(&s_counts);
freeCounts(&r_counts); freeCounts(&r_counts);
return 1; //FIXME In this case is always true... return 1; //FIXME In this case is always true...
...@@ -132,14 +153,26 @@ int sync_communication(char *send, char **recv, int qty, int myId, int numP, int ...@@ -132,14 +153,26 @@ int sync_communication(char *send, char **recv, int qty, int myId, int numP, int
* - comm (IN): Communicator to use to perform the redistribution. * - comm (IN): Communicator to use to perform the redistribution.
* *
*/ */
void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm) { void sync_point2point(void *send, void *recv, int mal_type, int is_intercomm, int myId, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm) {
int i, j, init, end, total_sends; int i, j, init, end, total_sends;
MPI_Request *sends; MPI_Request *sends;
MPI_Datatype datatype;
if(mal_type == MAL_INT) {
datatype = MPI_INT;
} else if(mal_type == MAL_DOUBLE) {
datatype = MPI_DOUBLE;
} else if(mal_type == MAL_CHAR) {
datatype = MPI_CHAR;
} else {
printf("Malleability -- Redistribution type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
}
init = s_counts.idI; init = s_counts.idI;
end = s_counts.idE; end = s_counts.idE;
if(!is_intercomm && (s_counts.idI == myId || s_counts.idE == myId + 1)) { if(!is_intercomm && (s_counts.idI == myId || s_counts.idE == myId + 1)) {
perform_manual_communication(send, recv, myId, s_counts, r_counts); perform_manual_communication(send, recv, mal_type, myId, s_counts, r_counts);
if(s_counts.idI == myId) init = s_counts.idI+1; if(s_counts.idI == myId) init = s_counts.idI+1;
else end = s_counts.idE-1; else end = s_counts.idE-1;
...@@ -152,7 +185,7 @@ void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct ...@@ -152,7 +185,7 @@ void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct
} }
for(i=init; i<end; i++) { for(i=init; i<end; i++) {
sends[j] = MPI_REQUEST_NULL; sends[j] = MPI_REQUEST_NULL;
MPI_Isend(send+s_counts.displs[i], s_counts.counts[i], MPI_CHAR, i, 99, comm, &(sends[j])); MPI_Isend(send+s_counts.displs[i], s_counts.counts[i], datatype, i, 99, comm, &(sends[j]));
j++; j++;
} }
...@@ -164,7 +197,7 @@ void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct ...@@ -164,7 +197,7 @@ void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct
} }
for(i=init; i<end; i++) { for(i=init; i<end; i++) {
MPI_Recv(recv+r_counts.displs[i], r_counts.counts[i], MPI_CHAR, i, 99, comm, MPI_STATUS_IGNORE); MPI_Recv(recv+r_counts.displs[i], r_counts.counts[i], datatype, i, 99, comm, MPI_STATUS_IGNORE);
} }
if(total_sends > 0) { if(total_sends > 0) {
...@@ -172,93 +205,6 @@ void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct ...@@ -172,93 +205,6 @@ void sync_point2point(char *send, char *recv, int is_intercomm, int myId, struct
} }
} }
/*
* Performs synchronous MPI-RMA operations to redistribute an array in a block distribution. Is should be called after calculating
* how data should be redistributed
*
* - send (IN): Array with the data to send. This value can not be NULL for parents.
* - recv (OUT): Array where data will be written. A NULL value is allowed if the process is not going to receive data.
* If the process receives data and is NULL, the behaviour is undefined.
* - r_counts (IN): Structure which describes how many elements will receive this process from each parent and the
* displacements.
* - tamBl (IN): How many elements are stored in the parameter "send".
* - comm (IN): Communicator to use to perform the redistribution. Must be an intracommunicator as MPI-RMA requirements.
* - red_method (IN): Type of data redistribution to use. In this case indicates the RMA operation(Lock or LockAll).
*
*/
void sync_rma(char *send, char *recv, struct Counts r_counts, int tamBl, MPI_Comm comm, int red_method) {
int aux_array_used;
MPI_Win win;
aux_array_used = 0;
if(send == NULL) {
tamBl = 1;
send = malloc(tamBl*sizeof(char)); //TODO Check if the value can be NULL at WIN_create
aux_array_used = 1;
}
MPI_Win_create(send, (MPI_Aint)tamBl, sizeof(char), MPI_INFO_NULL, comm, &win);
switch(red_method) {
case MALL_RED_RMA_LOCKALL:
sync_rma_lockall(recv, r_counts, win);
break;
case MALL_RED_RMA_LOCK:
sync_rma_lock(recv, r_counts, win);
break;
}
MPI_Win_free(&win);
if(aux_array_used) {
free(send);
send = NULL;
}
}
/*
* Performs a passive MPI-RMA data redistribution for a single array using the passive epochs Lock/Unlock.
* - recv (OUT): Array where data will be written. A NULL value is allowed if the process is not going to receive data.
* If the process receives data and is NULL, the behaviour is undefined.
* - r_counts (IN): Structure which describes how many elements will receive this process from each parent and the
* displacements.
* - win (IN): Window to use to perform the redistribution.
*
*/
void sync_rma_lock(char *recv, struct Counts r_counts, MPI_Win win) {
int i, target_displs;
target_displs = r_counts.first_target_displs;
for(i=r_counts.idI; i<r_counts.idE; i++) {
MPI_Win_lock(MPI_LOCK_SHARED, i, MPI_MODE_NOCHECK, win);
MPI_Get(recv+r_counts.displs[i], r_counts.counts[i], MPI_CHAR, i, target_displs, r_counts.counts[i], MPI_CHAR, win);
MPI_Win_unlock(i, win);
target_displs=0;
}
}
/*
* Performs a passive MPI-RMA data redistribution for a single array using the passive epochs Lockall/Unlockall.
* - recv (OUT): Array where data will be written. A NULL value is allowed if the process is not going to receive data.
* If the process receives data and is NULL, the behaviour is undefined.
* - r_counts (IN): Structure which describes how many elements will receive this process from each parent and the
* displacements.
* - win (IN): Window to use to perform the redistribution.
*
*/
void sync_rma_lockall(char *recv, struct Counts r_counts, MPI_Win win) {
int i, target_displs;
target_displs = r_counts.first_target_displs;
MPI_Win_lock_all(MPI_MODE_NOCHECK, win);
for(i=r_counts.idI; i<r_counts.idE; i++) {
MPI_Get(recv+r_counts.displs[i], r_counts.counts[i], MPI_CHAR, i, target_displs, r_counts.counts[i], MPI_CHAR, win);
target_displs=0;
}
MPI_Win_unlock_all(win);
}
//================================================================================ //================================================================================
//================================================================================ //================================================================================
//========================ASYNCHRONOUS FUNCTIONS================================== //========================ASYNCHRONOUS FUNCTIONS==================================
...@@ -289,16 +235,28 @@ void sync_rma_lockall(char *recv, struct Counts r_counts, MPI_Win win) { ...@@ -289,16 +235,28 @@ void sync_rma_lockall(char *recv, struct Counts r_counts, MPI_Win win) {
* *
* returns: An integer indicating if the operation has been completed(TRUE) or not(FALSE). //FIXME In this case is always false... * returns: An integer indicating if the operation has been completed(TRUE) or not(FALSE). //FIXME In this case is always false...
*/ */
int async_communication(char *send, char **recv, int qty, int myId, int numP, int numO, int is_children_group, int red_method, int red_strategies, MPI_Comm comm, MPI_Request **requests, size_t *request_qty) { int async_communication(void *send, void **recv, int qty, int mal_type, int dependency, int myId, int numP, int numO, int is_children_group, int red_method, int red_strategies, MPI_Comm comm, MPI_Request **requests, size_t *request_qty) {
int is_intercomm, aux_comm_used = 0; int is_intercomm, aux_comm_used = 0;
struct Counts s_counts, r_counts; struct Counts s_counts, r_counts;
MPI_Datatype datatype;
MPI_Comm aux_comm = MPI_COMM_NULL; MPI_Comm aux_comm = MPI_COMM_NULL;
/* PREPARE COMMUNICATION */ /* PREPARE COMMUNICATION */
MPI_Comm_test_inter(comm, &is_intercomm); MPI_Comm_test_inter(comm, &is_intercomm);
prepare_redistribution(qty, myId, numP, numO, is_children_group, is_intercomm, recv, &s_counts, &r_counts); prepare_redistribution(qty, mal_type, myId, numP, numO, is_children_group, is_intercomm, recv, &s_counts, &r_counts);
check_requests(s_counts, r_counts, requests, request_qty); check_requests(s_counts, r_counts, requests, request_qty);
if(mal_type == MAL_INT) {
datatype = MPI_INT;
} else if(mal_type == MAL_DOUBLE) {
datatype = MPI_DOUBLE;
} else if(mal_type == MAL_CHAR) {
datatype = MPI_CHAR;
} else {
printf("Malleability -- Redistribution type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
}
/* PERFORM COMMUNICATION */ /* PERFORM COMMUNICATION */
switch(red_method) { switch(red_method) {
...@@ -306,11 +264,11 @@ int async_communication(char *send, char **recv, int qty, int myId, int numP, in ...@@ -306,11 +264,11 @@ int async_communication(char *send, char **recv, int qty, int myId, int numP, in
case MALL_RED_RMA_LOCK: case MALL_RED_RMA_LOCK:
return MALL_DENIED; //TODO Realizar versiones asíncronas return MALL_DENIED; //TODO Realizar versiones asíncronas
case MALL_RED_POINT: case MALL_RED_POINT:
async_point2point(send, *recv, s_counts, r_counts, comm, *requests); async_point2point(send, *recv, datatype, s_counts, r_counts, comm, *requests);
break; break;
case MALL_RED_BASELINE: case MALL_RED_BASELINE:
default: default:
MPI_Ialltoallv(send, s_counts.counts, s_counts.displs, MPI_CHAR, *recv, r_counts.counts, r_counts.displs, MPI_CHAR, comm, &((*requests)[0])); MPI_Ialltoallv(send, s_counts.counts, s_counts.displs, datatype, *recv, r_counts.counts, r_counts.displs, datatype, comm, &((*requests)[0]));
break; break;
} }
...@@ -329,6 +287,18 @@ int async_communication(char *send, char **recv, int qty, int myId, int numP, in ...@@ -329,6 +287,18 @@ int async_communication(char *send, char **recv, int qty, int myId, int numP, in
if(aux_comm_used) { if(aux_comm_used) {
MPI_Comm_free(&aux_comm); MPI_Comm_free(&aux_comm);
} }
if(dependency == 1+MAL_DATA_INDEPENDENT) {
if(is_children_group) {
ind_recv = *recv;
} else {
ind_send = send;
if(!is_intercomm) {
ind_recv = *recv;
}
}
}
freeCounts(&s_counts); freeCounts(&s_counts);
freeCounts(&r_counts); freeCounts(&r_counts);
return 0; //FIXME In this case is always false... return 0; //FIXME In this case is always false...
...@@ -349,16 +319,16 @@ int async_communication(char *send, char **recv, int qty, int myId, int numP, in ...@@ -349,16 +319,16 @@ int async_communication(char *send, char **recv, int qty, int myId, int numP, in
* - requests (OUT): Pointer to array of requests to be used to determine if the communication has ended. * - requests (OUT): Pointer to array of requests to be used to determine if the communication has ended.
* *
*/ */
void async_point2point(char *send, char *recv, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm, MPI_Request *requests) { void async_point2point(void *send, void *recv, MPI_Datatype datatype, struct Counts s_counts, struct Counts r_counts, MPI_Comm comm, MPI_Request *requests) {
int i, j = 0; int i, j = 0;
for(i=s_counts.idI; i<s_counts.idE; i++) { for(i=s_counts.idI; i<s_counts.idE; i++) {
MPI_Isend(send+s_counts.displs[i], s_counts.counts[i], MPI_CHAR, i, 99, comm, &(requests[j])); MPI_Isend(send+s_counts.displs[i], s_counts.counts[i], datatype, i, 99, comm, &(requests[j]));
j++; j++;
} }
for(i=r_counts.idI; i<r_counts.idE; i++) { for(i=r_counts.idI; i<r_counts.idE; i++) {
MPI_Irecv(recv+r_counts.displs[i], r_counts.counts[i], MPI_CHAR, i, 99, comm, &(requests[j])); MPI_Irecv(recv+r_counts.displs[i], r_counts.counts[i], datatype, i, 99, comm, &(requests[j]));
j++; j++;
} }
} }
...@@ -389,13 +359,25 @@ void async_point2point(char *send, char *recv, struct Counts s_counts, struct Co ...@@ -389,13 +359,25 @@ void async_point2point(char *send, char *recv, struct Counts s_counts, struct Co
* - r_counts (OUT): Struct where is indicated how many elements receives this process from other processes in the previous group. * - r_counts (OUT): Struct where is indicated how many elements receives this process from other processes in the previous group.
* *
*/ */
void prepare_redistribution(int qty, int myId, int numP, int numO, int is_children_group, int is_intercomm, char **recv, struct Counts *s_counts, struct Counts *r_counts) { void prepare_redistribution(int qty, int mal_type, int myId, int numP, int numO, int is_children_group, int is_intercomm, void **recv, struct Counts *s_counts, struct Counts *r_counts) {
int array_size = numO; int array_size = numO;
int offset_ids = 0; int offset_ids = 0;
size_t datasize;
struct Dist_data dist_data; struct Dist_data dist_data;
if(mal_type == MAL_INT) {
datasize = sizeof(int);
} else if(mal_type == MAL_DOUBLE) {
datasize = sizeof(double);
} else if(mal_type == MAL_CHAR) {
datasize = sizeof(char);
} else {
printf("Malleability -- Redistribution type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
}
if(is_intercomm) { if(is_intercomm) {
offset_ids = numP; //FIXME Modify only if active? //offset_ids = numP; //FIXME Modify only if active?
} else { } else {
array_size = numP > numO ? numP : numO; array_size = numP > numO ? numP : numO;
} }
...@@ -408,9 +390,9 @@ void prepare_redistribution(int qty, int myId, int numP, int numO, int is_childr ...@@ -408,9 +390,9 @@ void prepare_redistribution(int qty, int myId, int numP, int numO, int is_childr
// Obtener distribución para este hijo // Obtener distribución para este hijo
get_block_dist(qty, myId, numP, &dist_data); get_block_dist(qty, myId, numP, &dist_data);
*recv = malloc(dist_data.tamBl * sizeof(char)); *recv = malloc(dist_data.tamBl * datasize);
//get_block_dist(qty, myId, numP, &dist_data); //get_block_dist(qty, myId, numP, &dist_data);
//print_counts(dist_data, r_counts->counts, r_counts->displs, numO+offset_ids, 0, "Children C "); //print_counts(dist_data, r_counts->counts, r_counts->displs, numO+offset_ids, 1, "Children C ");
} else { } else {
//get_block_dist(qty, myId, numP, &dist_data); //get_block_dist(qty, myId, numP, &dist_data);
...@@ -419,10 +401,10 @@ void prepare_redistribution(int qty, int myId, int numP, int numO, int is_childr ...@@ -419,10 +401,10 @@ void prepare_redistribution(int qty, int myId, int numP, int numO, int is_childr
prepare_comm_alltoall(myId, numO, numP, qty, offset_ids, r_counts); prepare_comm_alltoall(myId, numO, numP, qty, offset_ids, r_counts);
// Obtener distribución para este hijo y reservar vector de recibo // Obtener distribución para este hijo y reservar vector de recibo
get_block_dist(qty, myId, numO, &dist_data); get_block_dist(qty, myId, numO, &dist_data);
*recv = malloc(dist_data.tamBl * sizeof(char)); *recv = malloc(dist_data.tamBl * datasize);
//print_counts(dist_data, r_counts->counts, r_counts->displs, array_size, 0, "Children P "); //print_counts(dist_data, r_counts->counts, r_counts->displs, array_size, 1, "Children P ");
} }
//print_counts(dist_data, s_counts->counts, s_counts->displs, numO+offset_ids, 0, "Parents "); //print_counts(dist_data, s_counts->counts, s_counts->displs, numO+offset_ids, 1, "Parents ");
} }
} }
...@@ -477,10 +459,32 @@ void check_requests(struct Counts s_counts, struct Counts r_counts, MPI_Request ...@@ -477,10 +459,32 @@ void check_requests(struct Counts s_counts, struct Counts r_counts, MPI_Request
* - s_counts (IN): Struct where is indicated how many elements sends this process to processes in the new group. * - s_counts (IN): Struct where is indicated how many elements sends this process to processes in the new group.
* - r_counts (IN): Struct where is indicated how many elements receives this process from other processes in the previous group. * - r_counts (IN): Struct where is indicated how many elements receives this process from other processes in the previous group.
*/ */
void perform_manual_communication(char *send, char *recv, int myId, struct Counts s_counts, struct Counts r_counts) { void perform_manual_communication(void *send, void *recv, int mal_type, int myId, struct Counts s_counts, struct Counts r_counts) {
int i; int i;
if(mal_type == MAL_INT) {
int *new_recv, *new_send;
new_recv = (int *) recv;
new_send = (int *) send;
for(i=0; i<s_counts.counts[myId];i++) {
new_recv[i+r_counts.displs[myId]] = new_send[i+s_counts.displs[myId]];
}
} else if(mal_type == MAL_DOUBLE) {
double *new_recv, *new_send;
new_recv = (double *) recv;
new_send = (double *) send;
for(i=0; i<s_counts.counts[myId];i++) {
new_recv[i+r_counts.displs[myId]] = new_send[i+s_counts.displs[myId]];
}
} else if(mal_type == MAL_CHAR) {
char *new_recv, *new_send;
new_recv = (char *) recv;
new_send = (char *) send;
for(i=0; i<s_counts.counts[myId];i++) { for(i=0; i<s_counts.counts[myId];i++) {
recv[i+r_counts.displs[myId]] = send[i+s_counts.displs[myId]]; new_recv[i+r_counts.displs[myId]] = new_send[i+s_counts.displs[myId]];
}
} else {
printf("Malleability -- Redistribution type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
} }
} }
...@@ -496,3 +500,42 @@ int malleability_red_contains_strat(int comm_strategies, int strategy, int *resu ...@@ -496,3 +500,42 @@ int malleability_red_contains_strat(int comm_strategies, int strategy, int *resu
if(result != NULL) *result = value; if(result != NULL) *result = value;
return value; return value;
} }
void recalculate_counts(struct Counts *counts, int *array, void **recv, int mal_type) {
int i, ini, fin;
ini = 0;
fin = counts->counts[counts->idI];
counts->counts[counts->idI] = recalculate_elems(array, ini, fin);
for(i=counts->idI+1; i<counts->idE; i++) {
fin = counts->displs[i] + counts->counts[i];
ini = counts->displs[i];
counts->counts[i] = recalculate_elems(array, ini, fin);
counts->displs[i] = counts->displs[i-1] + counts->counts[i-1];
}
if(*recv != NULL) {
int datasize, qty;
if(mal_type == MAL_INT) {
datasize = sizeof(int);
} else if(mal_type == MAL_DOUBLE) {
datasize = sizeof(double);
} else if(mal_type == MAL_CHAR) {
datasize = sizeof(char);
} else {
printf("Malleability -- Redistribution type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
}
qty = counts->counts[counts->idE-1] + counts->displs[counts->idE-1];
free(*recv);
*recv = malloc(qty * datasize);
}
}
int recalculate_elems(int *array, int ini, int fin) {
int i, sol = 0;
for(i=ini; i<fin; i++) {
sol += array[i];
}
return sol;
}
malleability/CommDist.h
View file @ 01e07630
...@@ -16,11 +16,11 @@ ...@@ -16,11 +16,11 @@
//#define MAL_USE_POINT 2 //#define MAL_USE_POINT 2
//#define MAL_USE_THREAD 3 //#define MAL_USE_THREAD 3
int sync_communication(char *send, char **recv, int qty, int myId, int numP, int numO, int is_children_group, int comm_type, MPI_Comm comm); int sync_communication(void *send, void **recv, int qty, int mal_type, int dependency, int myId, int numP, int numO, int is_children_group, int comm_type, MPI_Comm comm);
int async_communication(char *send, char **recv, int qty, int myId, int numP, int numO, int is_children_group, int red_method, int red_strategies, MPI_Comm comm, MPI_Request **requests, size_t *request_qty); int async_communication(void *send, void **recv, int qty, int mal_type, int dependency, int myId, int numP, int numO, int is_children_group, int red_method, int red_strategies, MPI_Comm comm, MPI_Request **requests, size_t *request_qty);
int send_async(char *array, int qty, int myId, int numP, MPI_Comm intercomm, int numP_child, MPI_Request **comm_req, int red_method, int red_strategies); int send_async(char *array, int qty, int mal_type, int myId, int numP, MPI_Comm intercomm, int numP_child, MPI_Request **comm_req, int red_method, int red_strategies);
void recv_async(char **array, int qty, int myId, int numP, MPI_Comm intercomm, int numP_parents, int red_method, int red_strategies); void recv_async(char **array, int qty, int mal_type, int myId, int numP, MPI_Comm intercomm, int numP_parents, int red_method, int red_strategies);
void malloc_comm_array(char **array, int qty, int myId, int numP); void malloc_comm_array(char **array, int qty, int myId, int numP);
......
malleability/malleabilityManager.c
View file @ 01e07630
...@@ -298,18 +298,18 @@ void get_malleability_user_comm(MPI_Comm *comm) { ...@@ -298,18 +298,18 @@ void get_malleability_user_comm(MPI_Comm *comm) {
* *
* //FIXME Si es constante se debería ir a asincrono, no sincrono * //FIXME Si es constante se debería ir a asincrono, no sincrono
*/ */
void malleability_add_data(void *data, size_t total_qty, int type, int is_replicated, int is_constant) { void malleability_add_data(void *data, size_t total_qty, int type, int dependency, int is_replicated, int is_constant) {
size_t total_reqs = 0; size_t total_reqs = 0;
if(is_constant) { if(is_constant) {
if(is_replicated) { if(is_replicated) {
add_data(data, total_qty, type, total_reqs, rep_s_data); add_data(data, total_qty, type, dependency, total_reqs, rep_s_data);
} else { } else {
add_data(data, total_qty, type, total_reqs, dist_s_data); add_data(data, total_qty, type, dependency, total_reqs, dist_s_data);
} }
} else { } else {
if(is_replicated) { if(is_replicated) {
add_data(data, total_qty, type, total_reqs, rep_a_data); //FIXME total_reqs==0 ??? add_data(data, total_qty, type, dependency, total_reqs, rep_a_data); //FIXME total_reqs==0 ???
} else { } else {
if(mall_conf->red_method == MALL_RED_BASELINE) { if(mall_conf->red_method == MALL_RED_BASELINE) {
total_reqs = 1; total_reqs = 1;
...@@ -319,7 +319,7 @@ void malleability_add_data(void *data, size_t total_qty, int type, int is_replic ...@@ -319,7 +319,7 @@ void malleability_add_data(void *data, size_t total_qty, int type, int is_replic
total_reqs = mall->numC; total_reqs = mall->numC;
} }
add_data(data, total_qty, type, total_reqs, dist_a_data); add_data(data, total_qty, type, dependency, total_reqs, dist_a_data);
} }
} }
} }
...@@ -333,18 +333,18 @@ void malleability_add_data(void *data, size_t total_qty, int type, int is_replic ...@@ -333,18 +333,18 @@ void malleability_add_data(void *data, size_t total_qty, int type, int is_replic
* Mas informacion en la funcion "modify_data". * Mas informacion en la funcion "modify_data".
* //FIXME Si es constante se debería ir a asincrono, no sincrono * //FIXME Si es constante se debería ir a asincrono, no sincrono
*/ */
void malleability_modify_data(void *data, size_t index, size_t total_qty, int type, int is_replicated, int is_constant) { void malleability_modify_data(void *data, size_t index, size_t total_qty, int type, int dependency, int is_replicated, int is_constant) {
size_t total_reqs = 0; size_t total_reqs = 0;
if(is_constant) { if(is_constant) {
if(is_replicated) { if(is_replicated) {
modify_data(data, index, total_qty, type, total_reqs, rep_s_data); modify_data(data, index, total_qty, type, dependency, total_reqs, rep_s_data);
} else { } else {
modify_data(data, index, total_qty, type, total_reqs, dist_s_data); modify_data(data, index, total_qty, type, dependency, total_reqs, dist_s_data);
} }
} else { } else {
if(is_replicated) { if(is_replicated) {
modify_data(data, index, total_qty, type, total_reqs, rep_a_data); //FIXME total_reqs==0 ??? modify_data(data, index, total_qty, type, dependency, total_reqs, rep_a_data); //FIXME total_reqs==0 ???
} else { } else {
if(mall_conf->red_method == MALL_RED_BASELINE) { if(mall_conf->red_method == MALL_RED_BASELINE) {
total_reqs = 1; total_reqs = 1;
...@@ -354,7 +354,7 @@ void malleability_modify_data(void *data, size_t index, size_t total_qty, int ty ...@@ -354,7 +354,7 @@ void malleability_modify_data(void *data, size_t index, size_t total_qty, int ty
total_reqs = mall->numC; total_reqs = mall->numC;
} }
modify_data(data, index, total_qty, type, total_reqs, dist_a_data); modify_data(data, index, total_qty, type, dependency, total_reqs, dist_a_data);
} }
} }
} }
...@@ -424,22 +424,22 @@ void malleability_get_data(void **data, size_t index, int is_replicated, int is_ ...@@ -424,22 +424,22 @@ void malleability_get_data(void **data, size_t index, int is_replicated, int is_
*/ */
void send_data(int numP_children, malleability_data_t *data_struct, int is_asynchronous) { void send_data(int numP_children, malleability_data_t *data_struct, int is_asynchronous) {
size_t i; size_t i;
char *aux_send, *aux_recv; void *aux_send, *aux_recv;
if(is_asynchronous) { if(is_asynchronous) {
for(i=0; i < data_struct->entries; i++) { for(i=0; i < data_struct->entries; i++) {
aux_send = (char *) data_struct->arrays[i]; //TODO Comprobar que realmente es un char aux_send = data_struct->arrays[i];
aux_recv = NULL; aux_recv = NULL;
async_communication(aux_send, &aux_recv, data_struct->qty[i], mall->myId, mall->numP, numP_children, MALLEABILITY_NOT_CHILDREN, mall_conf->red_method, mall_conf->red_strategies, mall->intercomm, async_communication(aux_send, &aux_recv, data_struct->qty[i], data_struct->types[i], data_struct->dependencies[i], mall->myId, mall->numP, numP_children, MALLEABILITY_NOT_CHILDREN, mall_conf->red_method, mall_conf->red_strategies, mall->intercomm,
&(data_struct->requests[i]), &(data_struct->request_qty[i])); &(data_struct->requests[i]), &(data_struct->request_qty[i]));
if(aux_recv != NULL) data_struct->arrays[i] = (void *) aux_recv; if(aux_recv != NULL) data_struct->arrays[i] = aux_recv;
} }
} else { } else {
for(i=0; i < data_struct->entries; i++) { for(i=0; i < data_struct->entries; i++) {
aux_send = (char *) data_struct->arrays[i]; //TODO Comprobar que realmente es un char aux_send = data_struct->arrays[i];
aux_recv = NULL; aux_recv = NULL;
sync_communication(aux_send, &aux_recv, data_struct->qty[i], mall->myId, mall->numP, numP_children, MALLEABILITY_NOT_CHILDREN, mall_conf->red_method, mall->intercomm); sync_communication(aux_send, &aux_recv, data_struct->qty[i], data_struct->types[i], data_struct->dependencies[i], mall->myId, mall->numP, numP_children, MALLEABILITY_NOT_CHILDREN, mall_conf->red_method, mall->intercomm);
if(aux_recv != NULL) data_struct->arrays[i] = (void *) aux_recv; if(aux_recv != NULL) data_struct->arrays[i] = aux_recv;
} }
} }
} }
...@@ -451,20 +451,20 @@ void send_data(int numP_children, malleability_data_t *data_struct, int is_async ...@@ -451,20 +451,20 @@ void send_data(int numP_children, malleability_data_t *data_struct, int is_async
*/ */
void recv_data(int numP_parents, malleability_data_t *data_struct, int is_asynchronous) { void recv_data(int numP_parents, malleability_data_t *data_struct, int is_asynchronous) {
size_t i; size_t i;
char *aux, aux_s; void *aux, *aux_s = NULL;
if(is_asynchronous) { if(is_asynchronous) {
for(i=0; i < data_struct->entries; i++) { for(i=0; i < data_struct->entries; i++) {
aux = (char *) data_struct->arrays[i]; //TODO Comprobar que realmente es un char aux = data_struct->arrays[i];
async_communication(&aux_s, &aux, data_struct->qty[i], mall->myId, mall->numP, numP_parents, MALLEABILITY_CHILDREN, mall_conf->red_method, mall_conf->red_strategies, mall->intercomm, async_communication(aux_s, &aux, data_struct->qty[i], data_struct->types[i], data_struct->dependencies[i], mall->myId, mall->numP, numP_parents, MALLEABILITY_CHILDREN, mall_conf->red_method, mall_conf->red_strategies, mall->intercomm,
&(data_struct->requests[i]), &(data_struct->request_qty[i])); &(data_struct->requests[i]), &(data_struct->request_qty[i]));
data_struct->arrays[i] = (void *) aux; data_struct->arrays[i] = aux;
} }
} else { } else {
for(i=0; i < data_struct->entries; i++) { for(i=0; i < data_struct->entries; i++) {
aux = (char *) data_struct->arrays[i]; //TODO Comprobar que realmente es un char aux = data_struct->arrays[i];
sync_communication(&aux_s, &aux, data_struct->qty[i], mall->myId, mall->numP, numP_parents, MALLEABILITY_CHILDREN, mall_conf->red_method, mall->intercomm); sync_communication(aux_s, &aux, data_struct->qty[i], data_struct->types[i], data_struct->dependencies[i], mall->myId, mall->numP, numP_parents, MALLEABILITY_CHILDREN, mall_conf->red_method, mall->intercomm);
data_struct->arrays[i] = (void *) aux; data_struct->arrays[i] = aux;
} }
} }
} }
...@@ -519,8 +519,13 @@ void Children_init() { ...@@ -519,8 +519,13 @@ void Children_init() {
MPI_Datatype datatype; MPI_Datatype datatype;
if(rep_s_data->types[i] == MAL_INT) { if(rep_s_data->types[i] == MAL_INT) {
datatype = MPI_INT; datatype = MPI_INT;
} else { } else if(rep_s_data->types[i] == MAL_DOUBLE) {
datatype = MPI_DOUBLE;
} else if(rep_s_data->types[i] == MAL_CHAR) {
datatype = MPI_CHAR; datatype = MPI_CHAR;
} else {
printf("Malleability -- Redistribution recv type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
} }
MPI_Bcast(rep_s_data->arrays[i], rep_s_data->qty[i], datatype, root_parents, mall->intercomm); MPI_Bcast(rep_s_data->arrays[i], rep_s_data->qty[i], datatype, root_parents, mall->intercomm);
} }
...@@ -694,8 +699,13 @@ int end_redistribution() { ...@@ -694,8 +699,13 @@ int end_redistribution() {
MPI_Datatype datatype; MPI_Datatype datatype;
if(rep_s_data->types[i] == MAL_INT) { if(rep_s_data->types[i] == MAL_INT) {
datatype = MPI_INT; datatype = MPI_INT;
} else { } else if(rep_s_data->types[i] == MAL_DOUBLE) {
datatype = MPI_DOUBLE;
} else if(rep_s_data->types[i] == MAL_CHAR) {
datatype = MPI_CHAR; datatype = MPI_CHAR;
} else {
printf("Malleability -- Redistribution data array type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1);
} }
MPI_Bcast(rep_s_data->arrays[i], rep_s_data->qty[i], datatype, rootBcast, mall->intercomm); MPI_Bcast(rep_s_data->arrays[i], rep_s_data->qty[i], datatype, rootBcast, mall->intercomm);
} }
......
malleability/malleabilityManager.h
View file @ 01e07630
...@@ -18,8 +18,8 @@ void set_malleability_configuration(int spawn_method, int spawn_strategies, int ...@@ -18,8 +18,8 @@ void set_malleability_configuration(int spawn_method, int spawn_strategies, int
void set_children_number(int numC); // TODO TO BE DEPRECATED void set_children_number(int numC); // TODO TO BE DEPRECATED
void get_malleability_user_comm(MPI_Comm *comm); void get_malleability_user_comm(MPI_Comm *comm);
void malleability_add_data(void *data, size_t total_qty, int type, int is_replicated, int is_constant); void malleability_add_data(void *data, size_t total_qty, int type, int dependency, int is_replicated, int is_constant);
void malleability_modify_data(void *data, size_t index, size_t total_qty, int type, int is_replicated, int is_constant); void malleability_modify_data(void *data, size_t index, size_t total_qty, int type, int dependency, int is_replicated, int is_constant);
void malleability_get_entries(size_t *entries, int is_replicated, int is_constant); void malleability_get_entries(size_t *entries, int is_replicated, int is_constant);
void malleability_get_data(void **data, size_t index, int is_replicated, int is_constant); void malleability_get_data(void **data, size_t index, int is_replicated, int is_constant);
#endif #endif
malleability/malleabilityStates.h
View file @ 01e07630
...@@ -22,10 +22,13 @@ enum mall_redistribution_methods{MALL_RED_BASELINE, MALL_RED_POINT, MALL_RED_RMA ...@@ -22,10 +22,13 @@ enum mall_redistribution_methods{MALL_RED_BASELINE, MALL_RED_POINT, MALL_RED_RMA
#define MAL_APP_EXECUTING 0 #define MAL_APP_EXECUTING 0
#define MAL_APP_ENDED 1 #define MAL_APP_ENDED 1
//TODO DEPRECATE
#define MAL_INT 0 #define MAL_INT 0
#define MAL_CHAR 1 #define MAL_CHAR 1
#define MAL_DOUBLE 2 #define MAL_DOUBLE 2
#define MAL_DATA_ALONE -1
#define MAL_DATA_INDEPENDENT 0
#define MAL_DATA_DEPENDENT 1
//////////////// ////////////////
#define MALLEABILITY_CHILDREN 1 #define MALLEABILITY_CHILDREN 1
......
malleability/malleabilityTypes.c
View file @ 01e07630
...@@ -20,7 +20,7 @@ void def_malleability_qty_type(malleability_data_t *data_struct_rep, malleabilit ...@@ -20,7 +20,7 @@ void def_malleability_qty_type(malleability_data_t *data_struct_rep, malleabilit
* todos los padres. La nueva serie "data" solo representa los datos * todos los padres. La nueva serie "data" solo representa los datos
* que tiene este padre. * que tiene este padre.
*/ */
void add_data(void *data, size_t total_qty, int type, size_t request_qty, malleability_data_t *data_struct) { void add_data(void *data, size_t total_qty, int type, int dependency, size_t request_qty, malleability_data_t *data_struct) {
size_t i; size_t i;
if(data_struct->entries == 0) { if(data_struct->entries == 0) {
...@@ -31,6 +31,7 @@ void add_data(void *data, size_t total_qty, int type, size_t request_qty, mallea ...@@ -31,6 +31,7 @@ void add_data(void *data, size_t total_qty, int type, size_t request_qty, mallea
data_struct->qty[data_struct->entries] = total_qty; data_struct->qty[data_struct->entries] = total_qty;
data_struct->types[data_struct->entries] = type; data_struct->types[data_struct->entries] = type;
data_struct->dependencies[data_struct->entries] = dependency;
data_struct->arrays[data_struct->entries] = data; data_struct->arrays[data_struct->entries] = data;
data_struct->request_qty[data_struct->entries] = request_qty; data_struct->request_qty[data_struct->entries] = request_qty;
...@@ -49,7 +50,7 @@ void add_data(void *data, size_t total_qty, int type, size_t request_qty, mallea ...@@ -49,7 +50,7 @@ void add_data(void *data, size_t total_qty, int type, size_t request_qty, mallea
* todos los padres. La nueva serie "data" solo representa los datos * todos los padres. La nueva serie "data" solo representa los datos
* que tiene este padre. * que tiene este padre.
*/ */
void modify_data(void *data, size_t index, size_t total_qty, int type, size_t request_qty, malleability_data_t *data_struct) { void modify_data(void *data, size_t index, size_t total_qty, int type, int dependency, size_t request_qty, malleability_data_t *data_struct) {
size_t i; size_t i;
if(data_struct->entries < index) { // Index does not exist if(data_struct->entries < index) { // Index does not exist
...@@ -62,6 +63,7 @@ void modify_data(void *data, size_t index, size_t total_qty, int type, size_t re ...@@ -62,6 +63,7 @@ void modify_data(void *data, size_t index, size_t total_qty, int type, size_t re
data_struct->qty[index] = total_qty; data_struct->qty[index] = total_qty;
data_struct->types[index] = type; data_struct->types[index] = type;
data_struct->dependencies[index] = dependency;
data_struct->arrays[index] = data; data_struct->arrays[index] = data;
data_struct->request_qty[index] = request_qty; data_struct->request_qty[index] = request_qty;
...@@ -83,10 +85,8 @@ void modify_data(void *data, size_t index, size_t total_qty, int type, size_t re ...@@ -83,10 +85,8 @@ void modify_data(void *data, size_t index, size_t total_qty, int type, size_t re
void comm_data_info(malleability_data_t *data_struct_rep, malleability_data_t *data_struct_dist, int is_children_group, int myId, int root, MPI_Comm intercomm) { void comm_data_info(malleability_data_t *data_struct_rep, malleability_data_t *data_struct_dist, int is_children_group, int myId, int root, MPI_Comm intercomm) {
int is_intercomm, rootBcast = MPI_PROC_NULL; int is_intercomm, rootBcast = MPI_PROC_NULL;
size_t i, j; size_t i, j;
datatype;
MPI_Datatype entries_type, struct_type; MPI_Datatype entries_type, struct_type;
MPI_Comm_test_inter(intercomm, &is_intercomm); MPI_Comm_test_inter(intercomm, &is_intercomm);
if(is_intercomm && !is_children_group) { if(is_intercomm && !is_children_group) {
rootBcast = myId == root ? MPI_ROOT : MPI_PROC_NULL; rootBcast = myId == root ? MPI_ROOT : MPI_PROC_NULL;
...@@ -112,6 +112,8 @@ void comm_data_info(malleability_data_t *data_struct_rep, malleability_data_t *d ...@@ -112,6 +112,8 @@ void comm_data_info(malleability_data_t *data_struct_rep, malleability_data_t *d
data_struct_rep->arrays[i] = (void *) malloc(data_struct_rep->qty[i] * sizeof(int)); data_struct_rep->arrays[i] = (void *) malloc(data_struct_rep->qty[i] * sizeof(int));
} else if(data_struct_rep->types[i] == MAL_DOUBLE) { } else if(data_struct_rep->types[i] == MAL_DOUBLE) {
data_struct_rep->arrays[i] = (void *) malloc(data_struct_rep->qty[i] * sizeof(double)); data_struct_rep->arrays[i] = (void *) malloc(data_struct_rep->qty[i] * sizeof(double));
} else if(data_struct_rep->types[i] == MAL_CHAR) {
data_struct_rep->arrays[i] = (void *) malloc(data_struct_rep->qty[i] * sizeof(char));
} else { } else {
printf("Malleability -- Redistribution data array type not recognised\n"); printf("Malleability -- Redistribution data array type not recognised\n");
MPI_Abort(MPI_COMM_WORLD, -1); MPI_Abort(MPI_COMM_WORLD, -1);
...@@ -152,6 +154,7 @@ void init_malleability_data_struct(malleability_data_t *data_struct, size_t size ...@@ -152,6 +154,7 @@ void init_malleability_data_struct(malleability_data_t *data_struct, size_t size
data_struct->max_entries = size; data_struct->max_entries = size;
data_struct->qty = (size_t *) malloc(size * sizeof(size_t)); data_struct->qty = (size_t *) malloc(size * sizeof(size_t));
data_struct->types = (int *) malloc(size * sizeof(int)); data_struct->types = (int *) malloc(size * sizeof(int));
data_struct->dependencies = (int *) malloc(size * sizeof(int));
data_struct->request_qty = (size_t *) malloc(size * sizeof(size_t)); data_struct->request_qty = (size_t *) malloc(size * sizeof(size_t));
data_struct->requests = (MPI_Request **) malloc(size * sizeof(MPI_Request *)); data_struct->requests = (MPI_Request **) malloc(size * sizeof(MPI_Request *));
data_struct->arrays = (void **) malloc(size * sizeof(void *)); data_struct->arrays = (void **) malloc(size * sizeof(void *));
...@@ -169,18 +172,19 @@ void init_malleability_data_struct(malleability_data_t *data_struct, size_t size ...@@ -169,18 +172,19 @@ void init_malleability_data_struct(malleability_data_t *data_struct, size_t size
*/ */
void realloc_malleability_data_struct(malleability_data_t *data_struct, size_t qty_to_add) { void realloc_malleability_data_struct(malleability_data_t *data_struct, size_t qty_to_add) {
size_t i, needed, *qty_aux, *request_qty_aux; size_t i, needed, *qty_aux, *request_qty_aux;
int *types_aux; int *types_aux, *dependencies_aux;
MPI_Request **requests_aux; MPI_Request **requests_aux;
void **arrays_aux; void **arrays_aux;
needed = data_struct->max_entries + qty_to_add; needed = data_struct->max_entries + qty_to_add;
qty_aux = (size_t *) realloc(data_struct->qty, needed * sizeof(int)); qty_aux = (size_t *) realloc(data_struct->qty, needed * sizeof(int));
types_aux = (int *) realloc(data_struct->types, needed * sizeof(int)); types_aux = (int *) realloc(data_struct->types, needed * sizeof(int));
dependencies_aux = (int *) realloc(data_struct->dependencies, needed * sizeof(int));
request_qty_aux = (size_t *) realloc(data_struct->request_qty, needed * sizeof(int)); request_qty_aux = (size_t *) realloc(data_struct->request_qty, needed * sizeof(int));
requests_aux = (MPI_Request **) realloc(data_struct->requests, needed * sizeof(MPI_Request *)); requests_aux = (MPI_Request **) realloc(data_struct->requests, needed * sizeof(MPI_Request *));
arrays_aux = (void **) realloc(data_struct->arrays, needed * sizeof(void *)); arrays_aux = (void **) realloc(data_struct->arrays, needed * sizeof(void *));
if(qty_aux == NULL || arrays_aux == NULL || requests_aux == NULL || types_aux == NULL || request_qty_aux == NULL) { if(qty_aux == NULL || arrays_aux == NULL || requests_aux == NULL || types_aux == NULL || dependencies_aux == NULL || request_qty_aux == NULL) {
fprintf(stderr, "Fatal error - No se ha podido realojar la memoria constante de datos a redistribuir/comunicar\n"); fprintf(stderr, "Fatal error - No se ha podido realojar la memoria constante de datos a redistribuir/comunicar\n");
MPI_Abort(MPI_COMM_WORLD, 1); MPI_Abort(MPI_COMM_WORLD, 1);
} }
...@@ -192,6 +196,7 @@ void realloc_malleability_data_struct(malleability_data_t *data_struct, size_t q ...@@ -192,6 +196,7 @@ void realloc_malleability_data_struct(malleability_data_t *data_struct, size_t q
data_struct->qty = qty_aux; data_struct->qty = qty_aux;
data_struct->types = types_aux; data_struct->types = types_aux;
data_struct->dependencies = dependencies_aux;
data_struct->request_qty = request_qty_aux; data_struct->request_qty = request_qty_aux;
data_struct->requests = requests_aux; data_struct->requests = requests_aux;
data_struct->arrays = arrays_aux; data_struct->arrays = arrays_aux;
...@@ -213,6 +218,9 @@ void free_malleability_data_struct(malleability_data_t *data_struct) { ...@@ -213,6 +218,9 @@ void free_malleability_data_struct(malleability_data_t *data_struct) {
if(data_struct->types != NULL) { if(data_struct->types != NULL) {
free(data_struct->types); free(data_struct->types);
} }
if(data_struct->dependencies != NULL) {
free(data_struct->dependencies);
}
if(data_struct->requests != NULL && data_struct->request_qty != NULL) { if(data_struct->requests != NULL && data_struct->request_qty != NULL) {
for(i=0; i<max; i++) { for(i=0; i<max; i++) {
if(data_struct->requests[i] != NULL) { if(data_struct->requests[i] != NULL) {
...@@ -270,22 +278,24 @@ void def_malleability_entries(malleability_data_t *data_struct_rep, malleability ...@@ -270,22 +278,24 @@ void def_malleability_entries(malleability_data_t *data_struct_rep, malleability
* TODO Refactor? * TODO Refactor?
*/ */
void def_malleability_qty_type(malleability_data_t *data_struct_rep, malleability_data_t *data_struct_dist, MPI_Datatype *new_type) { void def_malleability_qty_type(malleability_data_t *data_struct_rep, malleability_data_t *data_struct_dist, MPI_Datatype *new_type) {
int counts = 6; int counts = 8;
int blocklengths[counts]; int blocklengths[counts];
MPI_Aint displs[counts]; MPI_Aint displs[counts];
MPI_Datatype types[counts]; MPI_Datatype types[counts];
types[0] = types[1] = types[3] = types[4] = MPI_UNSIGNED_LONG; types[0] = types[1] = types[4] = types[5] = MPI_UNSIGNED_LONG;
types[2] = types[5] = MPI_INT; types[2] = types[3] = types[6] = types[7] = MPI_INT;
blocklengths[0] = blocklengths[1] = blocklengths[2] = data_struct_rep->entries; blocklengths[0] = blocklengths[1] = blocklengths[2] = blocklengths[3] = data_struct_rep->entries;
blocklengths[3] = blocklengths[4] = blocklengths[5] = data_struct_dist->entries; blocklengths[4] = blocklengths[5] = blocklengths[6] = blocklengths[7] = data_struct_dist->entries;
MPI_Get_address((data_struct_rep->qty), &displs[0]); MPI_Get_address((data_struct_rep->qty), &displs[0]);
MPI_Get_address((data_struct_rep->request_qty), &displs[1]); MPI_Get_address((data_struct_rep->request_qty), &displs[1]);
MPI_Get_address((data_struct_rep->types), &displs[2]); MPI_Get_address((data_struct_rep->types), &displs[2]);
MPI_Get_address((data_struct_dist->qty), &displs[3]); MPI_Get_address((data_struct_rep->dependencies), &displs[3]);
MPI_Get_address((data_struct_dist->request_qty), &displs[4]); MPI_Get_address((data_struct_dist->qty), &displs[4]);
MPI_Get_address((data_struct_dist->types), &displs[5]); MPI_Get_address((data_struct_dist->request_qty), &displs[5]);
MPI_Get_address((data_struct_dist->types), &displs[6]);
MPI_Get_address((data_struct_dist->dependencies), &displs[7]);
MPI_Type_create_struct(counts, blocklengths, displs, types, new_type); MPI_Type_create_struct(counts, blocklengths, displs, types, new_type);
MPI_Type_commit(new_type); MPI_Type_commit(new_type);
......
malleability/malleabilityTypes.h
View file @ 01e07630
...@@ -15,6 +15,7 @@ typedef struct { ...@@ -15,6 +15,7 @@ typedef struct {
size_t max_entries; size_t max_entries;
size_t *qty; // Indica numero de elementos en cada subvector de sync_array size_t *qty; // Indica numero de elementos en cada subvector de sync_array
int *types; int *types;
int *dependencies;
// Vector de vectores de request. En cada elemento superior se indican los requests a comprobar para dar por finalizada // Vector de vectores de request. En cada elemento superior se indican los requests a comprobar para dar por finalizada
// la comunicacion de ese dato // la comunicacion de ese dato
...@@ -24,8 +25,8 @@ typedef struct { ...@@ -24,8 +25,8 @@ typedef struct {
} malleability_data_t; } malleability_data_t;
void add_data(void *data, size_t total_qty, int type, size_t request_qty, malleability_data_t *data_struct); void add_data(void *data, size_t total_qty, int type, int dependency, size_t request_qty, malleability_data_t *data_struct);
void modify_data(void *data, size_t index, size_t total_qty, int type, size_t request_qty, malleability_data_t *data_struct); void modify_data(void *data, size_t index, size_t total_qty, int type, int dependency, size_t request_qty, malleability_data_t *data_struct);
void comm_data_info(malleability_data_t *data_struct_rep, malleability_data_t *data_struct_dist, int is_children_group, int myId, int root, MPI_Comm intercomm); void comm_data_info(malleability_data_t *data_struct_rep, malleability_data_t *data_struct_dist, int is_children_group, int myId, int root, MPI_Comm intercomm);
void free_malleability_data_struct(malleability_data_t *data_struct); void free_malleability_data_struct(malleability_data_t *data_struct);
......
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