Improvements in run scripts. Bandwidth and Latency usage is being deprecated

Codes/Main/Main.c

@@ -50,8 +50,8 @@ int main(int argc, char *argv[]) {
     }
 
     MPI_Init_thread(&argc, &argv, MPI_THREAD_MULTIPLE, &req);
-    MPI_Comm_size(MPI_COMM_WORLD, &numP);
     MPI_Comm_rank(MPI_COMM_WORLD, &myId);
+    MPI_Comm_size(MPI_COMM_WORLD, &numP);
     comm = MPI_COMM_WORLD;
 
     if(req != MPI_THREAD_MULTIPLE) {
@@ -435,8 +435,8 @@ void init_application() {
   }
 
   int message_tam = 100000000;
-  config_file->latency_m = latency(group->myId, group->numP, comm);
-  config_file->bw_m = bandwidth(group->myId, group->numP, comm, config_file->latency_m, message_tam);
+  //config_file->latency_m = latency(group->myId, group->numP, comm);
+  //config_file->bw_m = bandwidth(group->myId, group->numP, comm, config_file->latency_m, message_tam);
 
   obtain_op_times(1);
 }

Codes/Main/configuration.c

@@ -141,9 +141,8 @@ void free_config(configuration *user_config) {
 void print_config(configuration *user_config) {
   if(user_config != NULL) {
     size_t i;
-    printf("Config loaded: R=%zu, S=%zu, granularity=%d, SDR=%d, ADR=%d, latency=%2.8f, bw=%lf\n",
-        user_config->n_resizes, user_config->n_stages, user_config->granularity, user_config->sdr, user_config->adr, 
-	user_config->latency_m, user_config->bw_m);
+    printf("Config loaded: R=%zu, S=%zu, granularity=%d, SDR=%d, ADR=%d\n",
+        user_config->n_resizes, user_config->n_stages, user_config->granularity, user_config->sdr, user_config->adr);
     for(i=0; i<user_config->n_stages; i++) {
       printf("Stage %zu: PT=%d, T_stage=%lf, bytes=%d\n",
         i, user_config->stages[i].pt, user_config->stages[i].t_stage, user_config->stages[i].real_bytes);
@@ -174,8 +173,8 @@ void print_config_group(configuration *user_config, size_t grp) {
       sons = user_config->groups[grp+1].procs;
     }
 
-    printf("Config: granularity=%d, SDR=%d, ADR=%d, latency=%2.8f, bw=%lf\n",
-        user_config->granularity, user_config->sdr, user_config->adr, user_config->latency_m, user_config->bw_m);
+    printf("Config: granularity=%d, SDR=%d, ADR=%d\n",
+        user_config->granularity, user_config->sdr, user_config->adr);
     for(i=0; i<user_config->n_stages; i++) {
       printf("Stage %zu: PT=%d, T_stage=%lf, bytes=%d\n",
         i, user_config->stages[i].pt, user_config->stages[i].t_stage, user_config->stages[i].real_bytes);

Codes/runBase.sh

@@ -21,6 +21,9 @@ read -r ini fin <<<$(echo $aux)
 diff=$(( fin - ini ))
 numP=$(head -$fin $configFile | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
 
+ls /home/martini/malleability_benchmark/Codes/build/a.out
+
+echo "Test PreRUN $numP"
 mpirun -np $numP $dir$codeDir/build/a.out $configFile $outIndex $nodelist $nodes
 
 echo "END RUN"

Codes/runValgrind.sh

@@ -4,7 +4,7 @@
 #SBATCH -N 1
 #SBATCH --exclude=c01,c00,c02
 
-dir="/home/usuario/Documentos/malleability_benchmark"
+dir="/home/martini/malleability_benchmark"
 codeDir="/Codes"
 
 nodelist=$SLURM_JOB_NODELIST
@@ -22,7 +22,6 @@ diff=$(( fin - ini ))
 numP=$(head -$fin $1 | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
 
 mpirun -np $numP valgrind --leak-check=full --show-leak-kinds=all --log-file=nc.vg.%p $dir$codeDir/build/a.out $configFile $outIndex $nodelist $nodes
-rm hostfile.o$SLURM_JOB_ID
 
 echo "END RUN"
 sed -i 's/application called MPI_Abort(MPI_COMM_WORLD, -100) - process/shrink cleaning/g' slurm-$SLURM_JOB_ID.out

Exec/singleRun.sh

@@ -41,6 +41,7 @@ read -r ini fin <<<$(echo $aux)
 diff=$(( fin - ini ))
 numP=$(head -$fin $configFile | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
 
+echo "Nodes=$SLURM_JOB_NODELIST"
 for ((i=0; i<qty; i++))
 do
   echo "Iter $i -- numP=$numP"