Commit eab7cec8 authored by iker_martin's avatar iker_martin
Browse files

Minor fix for MPICH4 in generalRun. Added new script to run all Ini files in current directory

parent 74048aba
...@@ -52,3 +52,4 @@ fi ...@@ -52,3 +52,4 @@ fi
echo "END TEST" echo "END TEST"
sed -i 's/application called MPI_Abort(MPI_COMM_WORLD, -100) - process/shrink cleaning/g' slurm-$SLURM_JOB_ID.out sed -i 's/application called MPI_Abort(MPI_COMM_WORLD, -100) - process/shrink cleaning/g' slurm-$SLURM_JOB_ID.out
sed -i 's/Abort(-100)/shrink cleaning/g' slurm-$SLURM_JOB_ID.out
#!/bin/bash
dir="/home/martini/malleability_benchmark"
partition="P1"
exclude="c00,c01,c02"
cores=20
# Runs in a given current directory all .ini files
# Parameter 1(Optional) - Amount of executions per file. Must be a positive number
#====== Do not modify these values =======
codeDir="/Codes/build"
execDir="/Exec"
ResultsDir="/Results"
use_extrae=0
qty=1
if [ $# -ge 1 ]
then
qty=$1
fi
files="./*.ini"
internalIndex=$(echo $files | tr -cd ' ' | wc -c)
index=$((0))
for config_file in $files
do
# FIXME Tener en cuenta que puede ser más de un resize
aux=$(grep "\[resize0\]" -n $config_file | cut -d ":" -f1)
ini=$(echo $aux | cut -d " " -f1)
fin=$(echo $aux | cut -d " " -f2)
diff=$(( fin - ini ))
numP1=$(head -$fin $config_file | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
aux=$(grep "\[resize1\]" -n $config_file | cut -d ":" -f1)
ini=$(echo $aux | cut -d " " -f1)
fin=$(echo $aux | cut -d " " -f2)
diff=$(( fin - ini ))
numP2=$(head -$fin $config_file | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
echo "------------------------------------------run np=$numP1"
if [ $numP1 -lt $numP2 ]
then
numP1=$numP2
fi
node_qty=$(($numP1 / $cores))
if [ $node_qty -eq 0 ]
then
node_qty=1
fi
outFileIndex=$(echo $config_file | sed s/[^0-9]//g)
if [[ $outFileIndex ]]; then
index=$outFileIndex
else
index=$internalIndex
((internalIndex++))
fi
#Execute test
echo "Execute job $index with Nodes=$node_qty and config_file=$config_file"
sbatch -p $partition --exclude=$exclude -N $node_qty $dir$execDir/generalRun.sh $dir $config_file $use_extrae $index $qty
done
echo "End"
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