Minor fix for MPICH4 in generalRun. Added new script to run all Ini files in current directory

Exec/generalRun.sh

@@ -52,3 +52,4 @@ fi
 
 echo "END TEST"
 sed -i 's/application called MPI_Abort(MPI_COMM_WORLD, -100) - process/shrink cleaning/g' slurm-$SLURM_JOB_ID.out
+sed -i 's/Abort(-100)/shrink cleaning/g' slurm-$SLURM_JOB_ID.out

Exec/runAll.sh

+#!/bin/bash
+
+dir="/home/martini/malleability_benchmark"
+partition="P1"
+exclude="c00,c01,c02"
+cores=20
+
+# Runs in a given current directory all .ini files
+# Parameter 1(Optional) - Amount of executions per file. Must be a positive number
+#====== Do not modify these values =======
+
+codeDir="/Codes/build"
+execDir="/Exec"
+ResultsDir="/Results"
+use_extrae=0
+
+qty=1
+if [ $# -ge 1 ]
+then
+  qty=$1
+fi
+
+files="./*.ini"
+internalIndex=$(echo $files | tr -cd ' ' | wc -c)
+index=$((0))
+for config_file in $files
+do
+# FIXME Tener en cuenta que puede ser más de un resize
+  aux=$(grep "\[resize0\]" -n $config_file | cut -d ":" -f1)
+  ini=$(echo $aux | cut -d " " -f1)
+  fin=$(echo $aux | cut -d " " -f2)
+  diff=$(( fin - ini ))
+  numP1=$(head -$fin $config_file | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
+
+  aux=$(grep "\[resize1\]" -n $config_file | cut -d ":" -f1)
+  ini=$(echo $aux | cut -d " " -f1)
+  fin=$(echo $aux | cut -d " " -f2)
+  diff=$(( fin - ini ))
+  numP2=$(head -$fin $config_file | tail -$diff | cut -d ';' -f1 | grep Procs | cut -d '=' -f2)
+
+  echo "------------------------------------------run np=$numP1"
+  if [ $numP1 -lt $numP2 ]
+  then
+    numP1=$numP2
+  fi
+
+  node_qty=$(($numP1 / $cores))
+  if [ $node_qty -eq 0 ]
+  then
+    node_qty=1
+  fi
+
+  outFileIndex=$(echo $config_file | sed s/[^0-9]//g)
+  if [[ $outFileIndex ]]; then 
+    index=$outFileIndex
+  else 
+    index=$internalIndex
+    ((internalIndex++))
+  fi
+
+  #Execute test
+  echo "Execute job $index with Nodes=$node_qty and config_file=$config_file"
+  sbatch -p $partition --exclude=$exclude -N $node_qty $dir$execDir/generalRun.sh $dir $config_file $use_extrae $index $qty
+done
+echo "End"