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Merge branch 'RMA-Distributions' of http://lorca.act.uji.es/gitlab/martini/malleability_benchmark into RMA-Distributions

Simplified function for preparing data redistribution. New feature for intercomms where they communicate using intracomms when redistributing data. Other minor changes.

Merge branch 'RMA-Distributions' of http://lorca.act.uji.es/gitlab/martini/malleability_benchmark into RMA-Distributions

# Conflicts:
#   Exec/CheckRun.sh
#   Exec/Extrae/trace_worker.sh
#   Exec/generalRunCostum.sh
#   Exec/multipleRuns.sh
#   Exec/singleRun.sh
#   Exec/singleRunCostum.sh

CreateIterDataframe 3 changes. 1- Added column to indicate number of parents if any an minor related tweaks. 2- Stages is now stored as a list to simplify analysis. 3- Asynch columns data now stores information of the group being created as a tuple. Malltimes bugfix for typo.

Merge branch 'RMA-Distributions' of http://lorca.act.uji.es/gitlab/martini/malleability_benchmark into RMA-Distributions

Merge branch 'RMA-Distributions' of http://lorca.act.uji.es/gitlab/martini/malleability_benchmark into RMA-Distributions

Minor bugfix in joinDf which appeared if called multiple times with the same df. Minor changes in MallTimes and CreateResizeDataframe.

Minor bugfix when a node has some cores in use but not all and they will stay after a reconfiguration.

Minor fixes. One script was not being called with all needed arguments. The time limit was not being calculated according to the number of missing executions.

Mino refactor in Merge spawn + P2P redistribution to avoid possible blocking of some parents processes to send data waiting for other parents to start receiving it.

Major refactor in Checkrun.sh: Added description; Allows limit time for launched jobs; Detected errors by the script are now saved at errores.txt so users can see them; Now calls auxiliary scripts for common steps; Other minor changes.

Added/modified description of multiple scripts. runAll.sh and singleRun.sh now use auxiliary threads and allow a limit time for the jobs launched.

Added description to general run scripts. Also, they have been modified to use auxiliary scripts and now give mpirun an initial hostlist to use.

Refactored code scripts to use auxiliary scripts when performing similar steps. Those tasks are getting the number of cores, initial hostlist and initial number of processes. Trace and Valgrind scripts are not fully tested.

Added bash scripts to be called by other scripts that need to perform similar tasks in some of their tasks

Minor bugfix in physical process distribution which did not take completely into account already existing processes for the Merge method.

Bugfix. There where two condition races that could happen if the main thread terminated earlier than the auxiliary thread when using the merge shrink.

Merge branch 'RMA-Distributions' of http://lorca.act.uji.es/gitlab/martini/malleability_benchmark into RMA-Distributions